Hi, I have using samtools on a standalone computer and encountered this error while trying to convert cram files to bam files. These cram files were previously converted successfully by my colleague when using samtools through iRODs (Sanger).
Error message: Slice ends beyond reference end. ERROR: md5sum reference mismatch for ref 1 pos 26310..47257971 CRAM: 6f3d18602e7dc00eb80e6245904f7e36 Ref : 4e80faaa9678ef991b5f9f5fc8ec6bcb Failure to decode slice [main_samview] truncated file. I am using Version: 1.3.1 (using htslib 1.3.1). I have tried reinstalling samtools but same error happened. Can I ask how can I solve this problem? Thanks! Best wishes, Yvonne ------------------------------------------------------------------------------ Attend Shape: An AT&T Tech Expo July 15-16. Meet us at AT&T Park in San Francisco, CA to explore cutting-edge tech and listen to tech luminaries present their vision of the future. This family event has something for everyone, including kids. Get more information and register today. http://sdm.link/attshape _______________________________________________ Samtools-help mailing list Samtools-help@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/samtools-help
