Dear Sir/Madam,
I have two VCF file and I would like to two them using the following command:
bcftools merge -m none -i 'AC:sum,AN:sum' -O z -o merge.vcf.gz file1.vcf.gz
file2.vcf.gz
But I couldn't figure out now the get the summary INFO field to work?
For example:
File1.vcf:
chr1 914876 rs13302983 T C 100 PASS
AC=4842;AF=0.966853;AN=5008
File2.vcf:
chr1 914876 24 T C 100 PASS
AC=1446;AF=0.723000;AN=2000
then the,
merge.vcf
chr1 914876 rs13302983;24 T C 100 PASS AF=0.723
Please help
Cheers,
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