I have tried to run "samtools depth -a bamfile -r 7:108096686-108096841" but I
did not get a zero output. The whole region (7:108096686-108096841) does not
have any coverage on the bam. Is there another way for samtools to produce read
depth of 0 for that region?
From: Fauni, Harper (NIH/NHGRI) [F]
Sent: Monday, December 19, 2016 3:33 PM
To: 'samtools-help@lists.sourceforge.net' <samtools-help@lists.sourceforge.net>
Subject: Samtools depth question
Hi,
Is it possible to use samtools depth and use more than 1 option like:
"samtools depth -a bamfile -r 7:108096686-108096841"?
Thanks and have a nice day!
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