Hi Admin, I used rmdup within samtools to remove duplicates for paired-end reads with default parameters. It turned out that in some cases only one mate of a read pair was kept. As I understand, read pairs should be kept rather than one mate of pairs is kept. I’ll appreciate it very much if you could give me some ideas about it.
Thank you. Best, Li Qian ------------------------------------------------------------------------------ Check out the vibrant tech community on one of the world's most engaging tech sites, SlashDot.org! http://sdm.link/slashdot _______________________________________________ Samtools-help mailing list Samtools-help@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/samtools-help
