王灿 wrote on 02/12/2017 07:48 PM: > In my linux command line ,I use "samtools tview" like this: > samtools tview XS002.final.bam -p chr12:25398284 -d out.html > > But I couldn't get a output "out.html" ,I just want to output a > common format file containing contents which is same to the output of > "samtools tivew XS002.final.bam -p chr12:25398284".What should I do ?
I believe the command would be: samtools tivew XS002.final.bam -p chr12:25398284 -d H > out.html although in my samtools 1.3.1 manual the command is described differently so I might try: samtools tivew -p chr12:25398284 -d H XS002.final.bam > out.html ...although I don't have anything to test on and haven't used this before. Hope that helps! ------------------------------------------------------------------------------ Announcing the Oxford Dictionaries API! The API offers world-renowned dictionary content that is easy and intuitive to access. Sign up for an account today to start using our lexical data to power your apps and projects. Get started today and enter our developer competition. http://sdm.link/oxford _______________________________________________ Samtools-help mailing list Samtools-help@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/samtools-help
