On Thu, May 11, 2017 at 09:04:38AM +0100, James Bonfield wrote:
> If you have public
> test data that causes this then it would be useful. If not, could you
> tell me what the alignments are on this reference?
No matter on that - I've reproduced it now. Fix incoming sometime,
but for what it's worth it doesn't seem to impact on retrieval which
is good. (With samtools; picard doesn't like it, but it also doesn't
seem to like cramtools indices for my demo data set either so I think
that's a different issue.)
James
--
James Bonfield (j...@sanger.ac.uk) | Hora aderat briligi. Nunc et Slythia Tova
| Plurima gyrabant gymbolitare vabo;
A Staden Package developer: | Et Borogovorum mimzebant undique formae,
https://sf.net/projects/staden/ | Momiferique omnes exgrabure Rathi.
--
The Wellcome Trust Sanger Institute is operated by Genome Research
Limited, a charity registered in England with number 1021457 and a
company registered in England with number 2742969, whose registered
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