based on the API:
int hts_idx_push(hts_idx_t *idx, int tid, int beg, int end,
uint64_t offset, int is_mapped);
and a quick look at the code, it looks like I might be able to create
a .csi index while writing a bgzip output. Is that correct?
basically, if I've just written a line/interval to fp and then do:
hts_idx_push(idx, tid, start, stop, bgzf_tell(fp))
will the bgzf_tell give the position that hts_idx_push expects? or is
there some issue with waiting til the block is complete?
thanks,
-Brent
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