hello,
I work for St. Marianna University School of Medicine in Japan.
I am a beginner in Bioinformatics.
Samtools does have an option to *filter* the reads according to regions
specified in the BED format.
$ samtools view -hL chr22_21804028_ref.Gene.bed PLCPRF5bis44.sam >
PLCPRF5bis44.filtered.sam
[E::sam_parse1] missing SAM header
[W::sam_read1] Parse error at line 2
[main_samview] truncated file.
But as above
I get an error message.
Is the command incorrect ?
or
Is sam format different?
We look forward to your reply.
Regards,
Ritsuko.
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