Hi,
I am using tabix -R to do multiple-chromosome extraction from a sorted and
indexed annotation file given a bed file with all indexes that need to be
filtered. The command is 'tabix annotationfile.bgz -R bedfile.bed'. The bed
file looks like:
1 1157280 1157281
2 53893683 53893684
...
But I failed to see all output- for some indexes it worked but some not. I
checked absent output with single-chromosome extraction using 'tabix file.bgz
chr:start-end' and it worked- so only tabix -R failed.
Does it because I used wrong format or command? Any thought on this?
Look forward to hearing from you. Thanks for your help in advance.
Best,
Ming
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