Dear samtools developers:
I run samtools mpileup and set the -d 100 (max per-file depth), and that is
the ouput information:
[mpileup] 1 samples in 2 input files
<mpileup> Set max per-file depth to 8000
Why the output (max per-file depth to 8000) is different from What I set
(max per-file depth to 100)?
Also, is the per-file depth the per-site depth?
I set the -d to be 100. Why I still get some records in the pileup file
whose depth is larger than 100 at the genomic site?
Look forward to hearing from you!
Best
Jing
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