Re: [Samtools-help] samtools not working with BWA -C flag

[Jennifer Liddle]

On 14/03/2019 15:14, Aengus Stewart wrote:
> I completely understand that and I can fix it.  However I am just pointing 
> out the current default we are getting from the
> illumina sequencers.

Doesn't the -i option handle that?

Jennifer.



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