Hi, I'm interested in the difference between samtools markdup vs picard markduplicates. Most of the information I find is comparing Samtools rmdup to picard markduplicates. This resource is very helpful: https://www.htslib.org/algorithms/duplicate.html, but does samtools markdup handle interchromosomal read-pairs like picard? What are the differences in the algorithms?
Jon -- Jon Belton, PhD Scientist II Arima Genomics, Inc. j...@arimagenomics.com
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