Hello, Samtools Mpileup does not generate correct headers After running samtools mpileup -A -E -f $reference $INPATH/*.bam > piled I get ASCII file with no header When trying to run downstream applications, like Lofreq, (and view header with samtools view), I get error like "fail to read the header of file.bam" Headers in my sam and bam files are correct -- Best regards Baiba Alkšere
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