Literature on the Stackshot ( https://cognisys-inc.com/stackshot-macro-rail-package.html ) says its smallest step size is 2 micrometers.

The smallest step a 9600 DPI scanner (Canon 9000F) needs to do is 2.64 micrometers.

The smallest step a 4800 DPI scanner (Canon 8800F) needs to do is 5.29 micrometers.

Of the three, the Stackshot has the smallest steps, at least on paper.

Plus the Stackshot has a sturdy rail and mounting system that is sized to take the weight of a mirrorless camera + lens. In comparison a scanners rail system is weaker, plus it is not sized to support the extra weight of a camera and lens, plus mounting is more problematic.

Therefore, on paper, your arrangement of using these scanners to move your camera does not offer benefits compared to the Stackshot.

What I would recommend you instead is to find an USB-attached stepper motor controller that you can easily direct with text commands from Linux. That you can then trivially make it do steps from a command line. Trinamic is a german company who does very nice work on providing very smooth movement control for stepper motors (and also BLDC motors). They - or someone using their parts - might have something that allows you to control it from a serial port that you can then attach to Linux (I am assuming Linux is a requirement for you?).

As for mechanism, you might find someone has made a mechanism for this exact purpose (focus stacking is an easy-to-implement but high-value niche hobby or research project). Or if you don't, then it is not terribly difficult to find mechanical parts normally used by hobbyists for building home CNC machines, and whip up a linear actuator mechanism (rail + carriage, pushed by a threaded rod turned by a stepper motor). With a little engineering work, using precision parts and fine microstepping enabled by Trinamic drivers and stepper motors, you might perhaps be able to achieve even smaller step sizes than your factory-made Stackshot.

2022.01.14. 17:35 keltezéssel, Joel Penner írta:
Hi everyone,

Thanks for the feedback everyone! Thanks for the info Povilas about the genesys backend. I do have some scanners that use it. Would you have some pointers for how to issue those commands to a scanner via the backend?

You're right Ralph, it might be easier to control them directly. I had thought of the buffer approach as well, maybe I'll experiment with that.

Thanks,

Joel

On Tue, Jan 4, 2022 at 12:47 PM Ralph Little <[email protected]> wrote:

    Hi,

    On 2022-01-04 9:05 a.m., Joel Penner wrote:
    > Hello,
    >
    > I am doing microscopic focus stacking with mirrorless cameras. I
    have
    > a Cognisys Stackshot rail that I am doing this with, but I also
    have a
    > bunch of Canon 9000F & 8800F scanners, so I am wondering whether I
    > could use the precision these devices have to move a camera
    forward by
    > small increments.
    >
    > I have already been experimenting with attaching a stepper motor
    to a
    > microscope, controlled by a Big Easy Driver and a Raspberry Pi.
    This
    > person used a scanner for focus stacking by connecting a scanner
    motor
    > to an external driver:
    >
    >
    
https://petapixel.com/2013/01/24/focus-stacking-macro-photographs-with-a-hacked-flatbed-scanner/

    >
    
<https://petapixel.com/2013/01/24/focus-stacking-macro-photographs-with-a-hacked-flatbed-scanner/>
    >
    > This would work for me, but would it be possible to manually
    move the
    > scanner imaging head with SANE and the scanner's firmware and
    > circuitry? Basically, I would need SANE to move the scanner imaging
    > head forward by a tiny increment, pause for a few seconds for the
    > camera to take a photo, move forward again and so on. I just need
    > total control of where the scanner imaging head is moved to and how
    > small the increments are. My goal is to use this rig to do
    timelapse
    > microscopic focus stacked images of plant growth.
    >
    > Ideally, the scanner imaging head light would be turned off too
    but I
    > could also use tape or disconnect the LED array. I have other
    scanner
    > models as well if the firmware or drivers of these Canon scanners
    > isn't suitable.
    >
    > Any ideas would be appreciated, thanks!
    >
    > Joel

    This *might* be possible if the usual movements that the scan head
    would
    make are sufficient for your need.

    What you can definitely do is to arrange for the scan head to move
    from
    home quickly to a start position and have the head move more
    slowly to
    an end position (speed depending on the requested resolution) after
    which the head would usually return to the home position. By
    controlling
    the rate at which the scan data is received from the machine, you
    might
    also be able to get the scan head to pause when the scan data
    buffer is
    full. Within the SANE API, those are really your options.

    Some scanners have a more high-level control, such is the case
    with the
    protocols that are handled by the pixma backend. I see that
    Povilas has
    answered regarding the genesys backend and the scanners that are
    supported there. The genesys controllers provide much more control
    over
    the hardware. Even then, using the SANE API is going to be quite
    limiting, but you could use the genesys code to directly control a
    genesys scanner.

    Honestly, you might be better off harvesting the components from the
    scanner and using an arduino or something. ;D

    Cheers,
    Ralph

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