Follow-up Comment #34, task #14528 (project administration): Sorry for the delay, I have just returned from holidays.
> These are text files (as well as AUTHORS), they should include the notices. README is only a fallback for binary files. The PDB text file format is very rigid, it is a strict fixed-columnar formatted text file <http://www.wwpdb.org/documentation/file-format-content/format33/sect1.html>. For example this structure distributed with relax: - 1OSA Protein Data Bank entry <https://www.rcsb.org/structure/1OSA>. - 1OSA PDB file <https://files.rcsb.org/view/1OSA.pdb>. The original copyright holders prior to the content being made public domain could theoretically be added to the PDB REMARK sections. However the REMARK section numbering and format can be important - although they can be in free form, in many cases intricate, automated, software-specific formatting is used that simple hand edits could easily break. Also, as discussed previously <https://savannah.gnu.org/task/?14528#comment32>, we absolutely cannot identify the original copyright holder. This task is impossible with the design of the public domain Protein Data Bank, as neither the PDB nor the original scientific publication identify the original copyright holder. This can sometimes be in the AUTHOR record, but again this could simply be the name of the supervisor, the lead scientist (as in the 1OSA example), or all the authors rather than the original copyright holder. In the almost 50 year history of the PDB, recording the true original copyright holder(s) has not be considered important, as that person(s) has waived their copyrights. In science, it is all the authors of the original paper that matter - and all those authors are credited in the PDB database files in the JRNL AUTH record. In the case of our software relax, most PDB files are used in the test suite fall into two categories: 1) Those that are deliberately unmodified from the originals found in the Protein Data Bank database <http://www.wwpdb.org/index>. This is so that we can forever test that we can correctly read the format. Being able to read modified PDB files does not guarantee that we can correctly read the originals. 2) Those PDB files that are generated either by relax or by other software. Again we need to test that the unmodified original can be read correctly. For a few tests, we read the PDB file generated by relax into internal data structures, output a new PDB file, and check that the diff is zero. We believe that having public domain statements (not identifying the pre-copyright-waiver owners), as well as copyright notices, in an accompanying README file is the correct way to handle PDB text files: - test_suite/shared_data/structures/README <https://sourceforge.net/p/nmr-relax/code/ci/master/tree/test_suite/shared_data/structures/README> > WRT the GFDL, I'm not sure. Perhaps you'll have to speak to [email protected]. I will try corresponding with RMS and the FSF licensing department. _______________________________________________________ Reply to this item at: <http://savannah.gnu.org/task/?14528> _______________________________________________ Message sent via Savannah https://savannah.gnu.org/
