Hi Konstantin,

Thank you for the reply.  Here is the output of smartctl.  We will see if a 
different drive model helps.

Sincerely,
Devin

[r...@lnx4103 ~]# smartctl -a /dev/sda
smartctl version 5.38 [x86_64-redhat-linux-gnu] Copyright (C) 2002-8 Bruce Allen
Home page is http://smartmontools.sourceforge.net/

=== START OF INFORMATION SECTION ===
Device Model:     WDC WD5002ABYS-02B1B0
Serial Number:    WD-WCASYDXXXXXX
Firmware Version: 02.03B03
User Capacity:    500,107,862,016 bytes
Device is:        Not in smartctl database [for details use: -P showall]
ATA Version is:   8
ATA Standard is:  Exact ATA specification draft version not indicated
Local Time is:    Wed Sep  8 23:34:17 2010 EDT
SMART support is: Available - device has SMART capability.
SMART support is: Enabled

=== START OF READ SMART DATA SECTION ===
SMART overall-health self-assessment test result: PASSED

General SMART Values:
Offline data collection status:  (0x84) Offline data collection activity
                                        was suspended by an interrupting 
command from host.
                                        Auto Offline Data Collection: Enabled.
Self-test execution status:      (   0) The previous self-test routine completed
                                        without error or no self-test has ever 
                                        been run.
Total time to complete Offline 
data collection:                 (9480) seconds.
Offline data collection
capabilities:                    (0x7b) SMART execute Offline immediate.
                                        Auto Offline data collection on/off 
support.
                                        Suspend Offline collection upon new
                                        command.
                                        Offline surface scan supported.
                                        Self-test supported.
                                        Conveyance Self-test supported.
                                        Selective Self-test supported.
SMART capabilities:            (0x0003) Saves SMART data before entering
                                        power-saving mode.
                                        Supports SMART auto save timer.
Error logging capability:        (0x01) Error logging supported.
                                        General Purpose Logging supported.
Short self-test routine 
recommended polling time:        (   2) minutes.
Extended self-test routine
recommended polling time:        ( 112) minutes.
Conveyance self-test routine
recommended polling time:        (   5) minutes.
SCT capabilities:              (0x303f) SCT Status supported.
                                        SCT Feature Control supported.
                                        SCT Data Table supported.

SMART Attributes Data Structure revision number: 16
Vendor Specific SMART Attributes with Thresholds:
ID# ATTRIBUTE_NAME          FLAG     VALUE WORST THRESH TYPE      UPDATED  
WHEN_FAILED RAW_VALUE
  1 Raw_Read_Error_Rate     0x002f   197   197   051    Pre-fail  Always       
-       900
  3 Spin_Up_Time            0x0027   239   236   021    Pre-fail  Always       
-       1050
  4 Start_Stop_Count        0x0032   100   100   000    Old_age   Always       
-       42
  5 Reallocated_Sector_Ct   0x0033   200   200   140    Pre-fail  Always       
-       0
  7 Seek_Error_Rate         0x002e   200   200   000    Old_age   Always       
-       0
  9 Power_On_Hours          0x0032   100   100   000    Old_age   Always       
-       401
 10 Spin_Retry_Count        0x0032   100   253   000    Old_age   Always       
-       0
 11 Calibration_Retry_Count 0x0032   100   253   000    Old_age   Always       
-       0
 12 Power_Cycle_Count       0x0032   100   100   000    Old_age   Always       
-       40
192 Power-Off_Retract_Count 0x0032   200   200   000    Old_age   Always       
-       39
193 Load_Cycle_Count        0x0032   200   200   000    Old_age   Always       
-       2
194 Temperature_Celsius     0x0022   121   112   000    Old_age   Always       
-       26
196 Reallocated_Event_Count 0x0032   200   200   000    Old_age   Always       
-       0
197 Current_Pending_Sector  0x0032   200   200   000    Old_age   Always       
-       0
198 Offline_Uncorrectable   0x0030   100   253   000    Old_age   Offline      
-       0
199 UDMA_CRC_Error_Count    0x0032   200   200   000    Old_age   Always       
-       0
200 Multi_Zone_Error_Rate   0x0008   100   253   000    Old_age   Offline      
-       0

SMART Error Log Version: 1
No Errors Logged

SMART Self-test log structure revision number 1
No self-tests have been logged.  [To run self-tests, use: smartctl -t]


SMART Selective self-test log data structure revision number 1
 SPAN  MIN_LBA  MAX_LBA  CURRENT_TEST_STATUS
    1        0        0  Not_testing
    2        0        0  Not_testing
    3        0        0  Not_testing
    4        0        0  Not_testing
    5        0        0  Not_testing
Selective self-test flags (0x0):
  After scanning selected spans, do NOT read-scan remainder of disk.
If Selective self-test is pending on power-up, resume after 0 minute delay.


On Sep 8, 2010, at 6:46 PM, Konstantin Olchanski wrote:

> On Wed, Sep 08, 2010 at 04:42:43PM -0400, Devin Bougie wrote:
>> Hi, All.  We are seeing periodic I/O delays on a new large compute node ...
> 
> 
> Hi, you do not say what your disks are (model number as reported by smartctl),
> but I have seen same symptoms as you describe with some WDC 2TB "advanced 
> format" disks.
> The problem vanished with the next shipment of these 2TB disks, which also 
> happen
> to have a slightly different model number.
> 
> So I say, if you see disk delays, try different disks (different maker, 
> different
> model, different capacity).
> 
> 
> -- 
> Konstantin Olchanski
> Data Acquisition Systems: The Bytes Must Flow!
> Email: olchansk-at-triumf-dot-ca
> Snail mail: 4004 Wesbrook Mall, TRIUMF, Vancouver, B.C., V6T 2A3, Canada

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