2012/3/13 Robert Layton <[email protected]>:
> Lars, you are right, it should have metric='precomputed' in it.
> However by passing the distance matrix without a metric, the features become
> "distance to point i", which act as sort of meta-features anyway, allowing
> training to happen. This means that it works with a distance matrix as
> input, even though that is probably not what you wanted. I believe that some
> classifiers use this concept, although it has escaped me which ones.

But then still the demo is odd, because it is passing a similarity
matrix, not distances:

D = distance.squareform(distance.pdist(X))
S = 1 - (D / np.max(D))


-- 
Lars Buitinck
Scientific programmer, ILPS
University of Amsterdam

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