meanwhile -- uploaded to Debian experimental and all releases on
NeuroDebian. While testing the installation I ran into a few issues
while sklearn.test():
* bulk of repeating deprecation warnings
* some failures from nose (I think similar ones were reported before to
be ignored -- correct me if I am wrong)
* failing doctests.
Here is the output I am getting:
$> ipython
impoPython 2.7.3 (default, Aug 26 2012, 11:57:48)
Type "copyright", "credits" or "license" for more information.
IPython 0.13 -- An enhanced Interactive Python.
? -> Introduction and overview of IPython's features.
%quickref -> Quick reference.
help -> Python's own help system.
object? -> Details about 'object', use 'object??' for extra details.
r
Welcome to pylab, a matplotlib-based Python environment [backend: TkAgg].
For more information, type 'help(pylab)'.
In [1]: import sklearn
In [2]: sklearn.test()
Running unit tests and doctests for sklearn
/usr/lib/python2.7/dist-packages/nose/util.py:14: DeprecationWarning: The
compiler package is deprecated and removed in Python 3.x.
from compiler.consts import CO_GENERATOR
NumPy version 1.6.2
NumPy is installed in /usr/lib/pymodules/python2.7/numpy
Python version 2.7.3 (default, Aug 26 2012, 11:57:48) [GCC 4.7.1]
nose version 1.1.2
I: Seeding RNGs with 236262593
......................................................S.2.17927109077
55.4082834902
.......None
..............EE..SS.......................................................S......................................................SEE.............................................................................................................................EE........S......................---
...................................................................................................................................................../usr/lib/pymodules/python2.7/sklearn/linear_model/coordinate_descent.py:267:
UserWarning: Objective did not converge for target 0, you might want to
increase the number of iterations
' to increase the number of iterations')
............../usr/lib/pymodules/python2.7/sklearn/metrics/cluster/supervised.py:775:
RuntimeWarning: underflow encountered in double_scalars
emi += (term1[nij] * term2 * term3)
.../usr/lib/pymodules/python2.7/numpy/core/fromnumeric.py:2374: RuntimeWarning:
invalid value encountered in double_scalars
return mean(axis, dtype, out)
........................................................................................................................................../usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62:
DeprecationWarning: Class NuSVC is deprecated; to be removed in v0.14;
use sklearn.svm.NuSVC instead
warnings.warn(msg, category=DeprecationWarning)
./usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class NuSVR is deprecated; to be removed in v0.14;
use sklearn.svm.NuSVR instead
warnings.warn(msg, category=DeprecationWarning)
./usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
./usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVR is deprecated; to be removed in v0.14;
use sklearn.svm.SVR instead
warnings.warn(msg, category=DeprecationWarning)
............................/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62:
DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
...../usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62:
DeprecationWarning: Class NuSVR is deprecated; to be removed in v0.14;
use sklearn.svm.NuSVR instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class NuSVR is deprecated; to be removed in v0.14;
use sklearn.svm.NuSVR instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVR is deprecated; to be removed in v0.14;
use sklearn.svm.SVR instead
warnings.warn(msg, category=DeprecationWarning)
..../usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62:
DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class NuSVC is deprecated; to be removed in v0.14;
use sklearn.svm.NuSVC instead
warnings.warn(msg, category=DeprecationWarning)
...../usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62:
DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
......../usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62:
DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class NuSVC is deprecated; to be removed in v0.14;
use sklearn.svm.NuSVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVR is deprecated; to be removed in v0.14;
use sklearn.svm.SVR instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class NuSVR is deprecated; to be removed in v0.14;
use sklearn.svm.NuSVR instead
warnings.warn(msg, category=DeprecationWarning)
.....EEE............./usr/lib/pymodules/python2.7/sklearn/tree/tree.py:525:
RuntimeWarning: divide by zero encountered in log
proba[k] = np.log(proba[k])
....FE..................................................../usr/lib/pymodules/python2.7/sklearn/linear_model/coordinate_descent.py:597:
UserWarning: precompute is ignored for sparse data
warnings.warn("precompute is ignored for sparse data")
/usr/lib/pymodules/python2.7/sklearn/qda.py:105: UserWarning: Variables are
collinear
warnings.warn("Variables are collinear")
./usr/lib/pymodules/python2.7/sklearn/pls.py:284: UserWarning: X scores are
null at iteration 1
warnings.warn('X scores are null at iteration %s' % k)
/usr/lib/pymodules/python2.7/sklearn/decomposition/nmf.py:497: UserWarning:
Iteration limit reached during fit
warnings.warn("Iteration limit reached during fit")
/usr/lib/pymodules/python2.7/sklearn/decomposition/pca.py:337:
DeprecationWarning: Using dim is deprecatedsince version 0.12, and backward
compatibility won't be maintained from version 0.14 onward.
n_components = self.dim
..../usr/lib/pymodules/python2.7/sklearn/neighbors/classification.py:131:
NeighborsWarning: kneighbors: neighbor k+1 and neighbor k have the same
distance: results will be dependent on data order.
neigh_dist, neigh_ind = self.kneighbors(X)
/usr/lib/pymodules/python2.7/sklearn/neighbors/classification.py:159:
NeighborsWarning: kneighbors: neighbor k+1 and neighbor k have the same
distance: results will be dependent on data order.
neigh_dist, neigh_ind = self.kneighbors(X)
/usr/lib/pymodules/python2.7/sklearn/neighbors/classification.py:131:
NeighborsWarning: kneighbors: neighbor k+1 and neighbor k have the same
distance: results will be dependent on data order.
neigh_dist, neigh_ind = self.kneighbors(X)
/usr/lib/pymodules/python2.7/sklearn/neighbors/classification.py:159:
NeighborsWarning: kneighbors: neighbor k+1 and neighbor k have the same
distance: results will be dependent on data order.
neigh_dist, neigh_ind = self.kneighbors(X)
./usr/lib/pymodules/python2.7/sklearn/neighbors/classification.py:131:
NeighborsWarning: kneighbors: neighbor k+1 and neighbor k have the same
distance: results will be dependent on data order.
neigh_dist, neigh_ind = self.kneighbors(X)
./usr/lib/pymodules/python2.7/sklearn/linear_model/coordinate_descent.py:760:
DeprecationWarning: Use alpha_. Using alpha is deprecatedsince version 0.12,
and backward compatibility won't be maintained from version 0.14 onward.
DeprecationWarning, stacklevel=1)
/usr/lib/pymodules/python2.7/sklearn/linear_model/coordinate_descent.py:760:
DeprecationWarning: Use alpha_. Using alpha is deprecatedsince version 0.12,
and backward compatibility won't be maintained from version 0.14 onward.
DeprecationWarning, stacklevel=1)
./usr/lib/pymodules/python2.7/sklearn/pls.py:62: UserWarning: Maximum number of
iterations reached
warnings.warn('Maximum number of iterations reached')
/usr/lib/pymodules/python2.7/sklearn/linear_model/coordinate_descent.py:760:
DeprecationWarning: Use alpha_. Using alpha is deprecatedsince version 0.12,
and backward compatibility won't be maintained from version 0.14 onward.
DeprecationWarning, stacklevel=1)
/usr/lib/pymodules/python2.7/sklearn/linear_model/coordinate_descent.py:760:
DeprecationWarning: Use alpha_. Using alpha is deprecatedsince version 0.12,
and backward compatibility won't be maintained from version 0.14 onward.
DeprecationWarning, stacklevel=1)
............/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62:
DeprecationWarning: Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to beemoved in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SV is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DepretionWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utilsinit__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
/usr/lib/pymodules/python2.7/sklearn/utils/__init__.py:62: DeprecationWarning:
Class SVC is deprecated; to be removed in v0.14;
use sklearn.svm.SVC instead
warnings.warn(msg, category=DeprecationWarning)
...................................SSS....S....S...........................................................................................EE
======================================================================
ERROR: Doctest: sklearn.datasets.base.load_sample_image
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/nose/plugins/doctests.py", line 395,
in tearDown
delattr(builtin_mod, self._result_var)
AttributeError: _
======================================================================
ERROR: Doctest: sklearn.datasets.base.load_sample_images
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/nose/plugins/doctests.py", line 395,
in tearDown
delattr(builtin_mod, self._result_var)
AttributeError: _
======================================================================
ERROR: Doctest: sklearn.ensemble.gradient_boosting.GradientBoostingClassifier
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/nose/plugins/doctests.py", line 395,
in tearDown
delattr(builtin_mod, self._result_var)
AttributeError: _
======================================================================
ERROR: Doctest: sklearn.ensemble.gradient_boosting.GradientBoostingRegressor
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/nose/plugins/doctests.py", line 395,
in tearDown
delattr(builtin_mod, self._result_var)
AttributeError: _
======================================================================
ERROR: Doctest: sklearn.linear_model.randomized_l1.RandomizedLasso
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/nose/plugins/doctests.py", line 395,
in tearDown
delattr(builtin_mod, self._result_var)
AttributeError: _
======================================================================
ERROR: Doctest: sklearn.linear_model.randomized_l1.RandomizedLogisticRegression
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/nose/plugins/doctests.py", line 395,
in tearDown
delattr(builtin_mod, self._result_var)
AttributeError: _
======================================================================
ERROR: Doctest: sklearn.tree.tree.DecisionTreeClassifier
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/nose/plugins/doctests.py", line 395,
in tearDown
delattr(builtin_mod, self._result_var)
AttribuError: _
======================================================================
ERROR: Doctest: sklearn.tree.tree.DecisionTreeRegressor
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/nose/plugins/doctests.py", line 395,
in tearDown
delattr(builtin_mod, self._result_var)
AttributeError: _
======================================================================
ERROR: Doctest: sklearn.tree.tree.export_graphviz
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/nose/plugins/doctests.py", line 395,
in tearDown
delattr(builtin_mod, self._result_var)
AttributeError: _
======================================================================
ERROR: Doctest: sklearn.utils.extmath.pinvh
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/nose/plugins/doctests.py", line 395,
in tearDown
delattr(builtin_mod, self._result_var)
AttributeError: _
======================================================================
ERROR: Doctest: sklearn._NoseTester.test
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/nose/plugins/doctests.py", line 395,
in tearDown
delattr(builtin_mod, self._result_var)
AttributeError: _
======================================================================
ERROR: Doctest: sklearn.test
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/nose/plugins/doctests.py", line 395,
in tearDown
delattr(builtin_mod, self._result_var)
AttributeError: _
======================================================================
FAIL: Doctest: sklearn.utils.extmath.pinvh
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/doctest.py", line 2201, in runTest
raise self.failureException(self.format_failure(new.getvalue()))
AssertionError: Failed doctest test for sklearn.utils.extmath.pinvh
File "/usr/lib/pymodules/python2.7/sklearn/utils/extmath.py", line 302, in
pinvh
----------------------------------------------------------------------
File "/usr/lib/pymodules/python2.7/sklearn/utils/extmath.py", line 336, in
sklearn.utils.extmath.pinvh
Failed example:
B = pinvh(a)
Exception raised:
Traceback (most recent call last):
File "/usr/lib/python2.7/doctest.py", line 1289, in __run
compileflags, 1) in test.globs
File "<doctest sklearn.utils.extmath.pinvh[3]>", line 1, in <module>
B = pinvh(a)
NameError: name 'pinvh' is not defined
----------------------------------------------------------------------
File "/usr/lib/pymodules/python2.7/sklearn/utils/extmath.py", line 337, in
sklearn.utils.extmath.pinvh
Failed example:
allclose(a, dot(a, dot(B, a)))
Exception raised:
Traceback (most recent call last):
File "/usr/lib/python2.7/doctest.py", line 1289, in __run
compileflags, 1) in test.globs
File "<doctest sklearn.utils.extmath.pinvh[4]>", line 1, in <module>
allclose(a, dot(a, dot(B, a)))
NameError: name 'B' is not defined
----------------------------------------------------------------------
File "/usr/lib/pymodules/python2.7/sklearn/utils/extmath.py", line 339, in
sklearn.utils.extmath.pinvh
Failed example:
allclose(B, dot(B, dot(a, B)))
Exception raised:
Traceback (most recent call last):
File "/usr/lib/python2.7/doctest.py", line 1289, in __run
compileflags, 1) in test.globs
File "<doctest sklearn.utils.extmath.pinvh[5]>", line 1, in <module>
allclose(B, dot(B, dot(a, B)))
NameError: name 'B' is not defined
----------------------------------------------------------------------
Ran 950 tests in 129.647s
FAILED (SKIP=11, errors=12, failures)
Out[2]: <nose.result.TextTestResult run=950 errors=12 failures=1>
On Thu, 06 Sep 2012, Yaroslav Halchenko wrote:
> ok
> https://github.com/scikit-learn/scikit-learn/issues/1121
> On Thu, 06 Sep 2012, Andreas Müller wrote:
> > Hi Yaroslav.
> > Thanks for investigating.
> > This is a bit unexpected as it seems to work on jenkins.
> > Maybe this is 32bit?
> > We could also try to make the test more robust.
> > Nelle has been looking into the algorithms a bit lately,
> > maybe she has some ideas.
> > Otherwise just skip the test for the moment and we can open
> > an issue and try to fix it for the future.
> > We might also look into having another version build on jenkins.
> > Olivier, do you think that is possible?
> > Cheers,
> > Andy
--
Yaroslav O. Halchenko
Postdoctoral Fellow, Department of Psychological and Brain Sciences
Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755
Phone: +1 (603) 646-9834 Fax: +1 (603) 646-1419
WWW: http://www.linkedin.com/in/yarik
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