I have a NxNxM matrix, which I obtained from running M lasso regressions
using bootstrapped data, with known mean and variance.

Each individual regression (aka, each of the M NxN matrixes) is sparse, and
I can obtain standard deviations for each of the weights that were obtained
multiple times.

What I wanted to know is:

1- Is there a way to efficiently calculate the covariance matrix given this
data which isn't than manually calculating all NxN weights?

If there isn't a way to do 1,

2- When calculating the covariance between two very sparse vectors, does it
make sense to include all (0,0) pairs, or should only pairs containing at
least one non-zero variable be included?

Thank you very much,

Federico
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