Ariel,
  what's k, how many data points do you have ?

There's a trivial k-means under
http://stackoverflow.com/questions/5529625/is-it-possible-to-specify-your-own-distance-function-using-scikits-learn-k-means
"verbose=1" gives you some idea of how clusters converge (or not).

(If you have even a few labeled data points, try SVM ?
SGDClassifier is really fast.)

cheers
  -- denis


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