On Fri, Mar 15, 2013 at 10:24 AM,  <[email protected]> wrote:
>> Having both margin fixed is an unlikely situation, especially for
>> confusion matrices. Your case looks like the one margin fixed. Could
>> you elaborate more on the final goal of your attempt?
>
> I would like to investigate more on Cohen's kappa (
> http://en.wikipedia.org/wiki/Cohens_kappa):
> It's not clear to how kappa would distribute given this "stratified
> sampling".

FYI: 
https://github.com/statsmodels/statsmodels/blob/master/statsmodels/stats/inter_rater.py#L237
I never looked at randomization (bootstrap, permutation for this)

>
> If I simply generate a "non-stratified" random confusion matrix, kappa
> becomes 0.

My guess is that if you want to sample form the unconditional or
semi-conditional (?) distribution, you would need to use the actual
probabilities for the contingency table, not a uniform/independent.

Josef

>
>
> Regards,
> Paul
>
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