On Thu, Mar 28, 2013 at 04:57:37PM +0100, Nelle Varoquaux wrote:
> Maybe we should add an argument named missing, with how the missing data is
> indicated in the matrices ? For example, the signature of the MDS, using nan 
> as
> missing data would be something like:

>     mds.fit(X, missing=np.nan)

This would be my favorite solution (however, you would be the argument in
the class init). And missing=None (which would be the default) would lead
to not using the SMACOF.

By the way, thanks a lot for volunteering to do that, Terry, this is
something that had been missing for quite a while.

G

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