Hi Jonathan,
I'm interested in this issue too, but never was quite able to fix mine.
I was told scikit-learn should work if one doesn't have to worry about image
analysis.
Anyways, I was pointed to this link, which might help you:
http://stackoverflow.com/q/8915296/166749
Harold
On May 28, 2013, at 4:29 AM, Vlad Niculae wrote:
> Could you specify what version of numpy and scipy you are using? I get
> the same failures with the current unstable versions, but not with
> numpy 1.7.1 and scipy 0.12.0
>
> Cheers,
> Vlad
>
> On Tue, May 28, 2013 at 7:26 AM, Jonathan S <jonathan.s...@gmail.com> wrote:
>> When I run: nosetests sklearn --exe
>>
>>
>> I get:
>> ......../System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy/lib/utils.py:1132:
>> DeprecationWarning: The compiler package is deprecated and removed in Python
>> 3.x.
>>
>> import compiler
>>
>> ............S........................................../Library/Python/2.7/site-packages/sklearn/manifold/spectral_embedding.py:225:
>> UserWarning: Graph is not fully connected, spectral embedding may not works
>> as expected.
>>
>> warnings.warn("Graph is not fully connected, spectral embedding"
>>
>> ...........SS....../Library/Python/2.7/site-packages/sklearn/datasets/tests/test_base.py:124:
>> UserWarning: Could not load sample images, PIL is not available.
>>
>> warnings.warn("Could not load sample images, PIL is not available.")
>>
>> .../Library/Python/2.7/site-packages/sklearn/datasets/tests/test_base.py:145:
>> UserWarning: Could not load sample images, PIL is not available.
>>
>> warnings.warn("Could not load sample images, PIL is not available.")
>>
>> ./Library/Python/2.7/site-packages/sklearn/datasets/tests/test_base.py:161:
>> UserWarning: Could not load sample images, PIL is not available.
>>
>> warnings.warn("Could not load sample images, PIL is not available.")
>>
>> .....SS................................................S.........................................................S.........................................SSS....................../Library/Python/2.7/site-packages/sklearn/externals/joblib/test/test_func_inspect.py:122:
>> UserWarning: Cannot inspect object <functools.partial object at
>> 0x10a956998>, ignore list will not work.
>>
>> nose.tools.assert_equal(filter_args(ff, ['y'], (1, )),
>>
>> ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................FF.......................................................................................S........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................SSS....S....S...................................................................................................................................
>>
>> ======================================================================
>>
>> FAIL: sklearn.feature_extraction.tests.test_image.test_connect_regions
>>
>> ----------------------------------------------------------------------
>>
>> Traceback (most recent call last):
>>
>> File "/Library/Python/2.7/site-packages/nose/case.py", line 197, in runTest
>>
>> self.test(*self.arg)
>>
>> File
>> "/Library/Python/2.7/site-packages/sklearn/feature_extraction/tests/test_image.py",
>> line 63, in test_connect_regions
>>
>> assert_equal(ndimage.label(mask)[1], cs_graph_components(graph)[0])
>>
>> AssertionError: 777 != 767
>>
>>
>> ======================================================================
>>
>> FAIL:
>> sklearn.feature_extraction.tests.test_image.test_connect_regions_with_grid
>>
>> ----------------------------------------------------------------------
>>
>> Traceback (most recent call last):
>>
>> File "/Library/Python/2.7/site-packages/nose/case.py", line 197, in runTest
>>
>> self.test(*self.arg)
>>
>> File
>> "/Library/Python/2.7/site-packages/sklearn/feature_extraction/tests/test_image.py",
>> line 70, in test_connect_regions_with_grid
>>
>> assert_equal(ndimage.label(mask)[1], cs_graph_components(graph)[0])
>>
>> AssertionError: 777 != 767
>>
>>
>> ----------------------------------------------------------------------
>>
>> Ran 1598 tests in 57.619s
>>
>>
>> FAILED (SKIP=16, failures=2)
>>
>>
>>
>> I don't know what is going on here? Any help? Besides this, I've installed
>> Scikit-learn without any issues on my OSX (10.8.3)
>>
>>
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