Hi Raphael
I would have a look at this talk (Scipy 2014):
https://www.youtube.com/watch?v=MxK7Fe4xfXM&list=PLYx7XA2nY5GfuhCvStxgbynFNrxr3VFog&index=111
as they have developed library to identify / track particles in images and
series of images
cheers
Nico
On 30 July 2014 09:50, Raphael Okoye <[email protected]> wrote:
> hi Ronnie,
>
> Thanks for the response. I want to extract the blobs/crystals from the
> background. I want to be able to accurately account for all the blobs in
> each image. As an aside question, please do you know if my existing python
> version will still work if I install Anaconda python on it?
>
> Regards
> Raphael.
>
>
>
>
> On 29 July 2014 13:21, Ronnie Ghose <[email protected]> wrote:
>
>> ... hasn't been in the last few days afaik Raphael. And looking at the
>> LAB channel alone without any changes *will* segment a few of those in
>> the 3rd image, also what features do you need exactly....?
>>
>>
>> On Tue, Jul 29, 2014 at 4:16 PM, Raphael Okoye <[email protected]>
>> wrote:
>>
>>> hi Andy,
>>>
>>> Thanks a lot. I have tried on my own but not with scikimage. I used
>>> cell profiler http://www.cellprofiler.org/... I tried using
>>> scikit-image but it's not working properly because not all it's libararies
>>> are working in the version of python I'm using. I was advised to install
>>> Anaconda and then proceed.
>>>
>>> Regards
>>> Raphael
>>>
>>>
>>> On 29 July 2014 19:36, Andy <[email protected]> wrote:
>>>
>>>> Hi Raphael.
>>>> This list is about the scikit-learn machine learning package, not image
>>>> analysis.
>>>> You might want to talk to the scikit-image list.
>>>> However, just asking for help for a general task without connecting it
>>>> to the package or having tried anything yourself is
>>>> not likely to get a great answer anywhere.
>>>>
>>>> Best,
>>>> Andy
>>>>
>>>>
>>>>
>>>> On 07/29/2014 07:03 PM, Raphael Okoye wrote:
>>>>
>>>> hi all,
>>>>
>>>> I want to analyze these images. See links below. The background and
>>>> the crystals have the same color thus, making it difficult to segment. And
>>>> since the background and crystals have the same color, it is difficult to
>>>> simply subtract the background. Please, I need ideas on how to proceed with
>>>> this analysis. Thanks.
>>>>
>>>> Raphael.
>>>>
>>>>
>>>> https://drive.google.com/file/d/0B6nj1d7RmQ7TRmNwZzI1ajdhbFk/edit?usp=sharing
>>>>
>>>>
>>>> https://drive.google.com/file/d/0B6nj1d7RmQ7TUUNpNEl4VzlWOEE/edit?usp=sharing
>>>>
>>>>
>>>> https://drive.google.com/file/d/0B6nj1d7RmQ7TcHpoNjM0ZFhSZ1U/edit?usp=sharing
>>>>
>>>>
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