Hi Ben. How did you install? I'm not sure if we can get the linker flags form numpy. Is your numpy also installed with the intel compiler?
Thanks, Andy On 07/11/2015 11:45 AM, Fulton, Ben wrote: > Hi, > > I tried to install sklearn on our cluster. It installed successfully, but > when running we got this error: > > >from sklearn.metrics.cluster import normalized_mutual_info_score > intel/13.1/composer_xe_2013.1.117/mkl/lib/intel64/libmkl_intel_thread.so: > undefined symbol: __kmpc_reduce_nowait > > I add the following line to metrics/setup.py to fix it: > > extra_link_args=["-Lintel/13.1/composer_xe_2013.1.117/compiler/lib/intel64/", > "-liomp5"], > > But I suspect that there may be other places with the same issue. Can anyone > suggest a more permanent fix? > > > -- > Ben Fulton > Research Technologies > Scientific Applications and Performance Tuning Indiana University > E-Mail: beful...@iu.edu > > > ------------------------------------------------------------------------------ > Don't Limit Your Business. Reach for the Cloud. > GigeNET's Cloud Solutions provide you with the tools and support that > you need to offload your IT needs and focus on growing your business. > Configured For All Businesses. Start Your Cloud Today. > https://www.gigenetcloud.com/ > _______________________________________________ > Scikit-learn-general mailing list > Scikit-learn-general@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/scikit-learn-general ------------------------------------------------------------------------------ Don't Limit Your Business. Reach for the Cloud. GigeNET's Cloud Solutions provide you with the tools and support that you need to offload your IT needs and focus on growing your business. Configured For All Businesses. Start Your Cloud Today. https://www.gigenetcloud.com/ _______________________________________________ Scikit-learn-general mailing list Scikit-learn-general@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/scikit-learn-general
