[Bioc-devel] package name

2023-11-24 Thread mauro castro
Hello Bioconductor Team,

We have a package that has been part of Bioconductor for a while, and we
are considering the possibility of renaming it.

We understand that this is not a straightforward process, and we are aware
of Bioconductor's encouragement not to rename packages.

However, we are currently working on publishing a paper about this package.
Following editorial recommendations, we have been asked to address several
reviewer demands, one of which involves renaming the package to better
align its primary objectives with the paper's narrative, title, and
abstract.

If necessary, we are open to deprecating the current package and submitting
a revised proposal with a new name.

I  would greatly appreciate your assistance in navigating this process.

Best,

Mauro

---

Prof. Mauro Castro, MD, PhD
Bioinformatics & Systems Biology Lab
Polytechnic Center
Federal University of Paraná - UFPR
Rua Alcides Vieira Arcoverde, 1225
Curitiba - PR 81520-260 - Brazil

E-mail: mauro.cas...@ufpr.br
Phone: +55-41-33614906
https://orcid.org/-0003-4942-8131

[[alternative HTML version deleted]]

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Re: [Bioc-devel] Log in to the BiocCredentials app

2021-05-04 Thread mauro castro
Hi Nitesh,

I was surprised that my account had never been activated; maybe I was
using some pre-git settings, until something stopped working.

Anyhow, I just activated the BiocCredentials and it's working now.

Many thanks,

Mauro

On Tue, 4 May 2021 at 14:34, Nitesh Turaga  wrote:
>
> Hi Mauro,
>
>
>
> I just checked and you’ve never activated your account. You should try to 
> activate it before you do anything else.
>
>
>
> Best,
>
>
>
> Nitesh
>
>
>
> From: mauro castro 
> Date: Tuesday, May 4, 2021 at 1:31 PM
> To: Nitesh Turaga 
> Cc: Bioc-devel 
> Subject: Re: [Bioc-devel] Log in to the BiocCredentials app
>
> Hi Nitesh,
>
> Thank you for your email. I tried to do the password reset again, but
> still haven't received an email from maintai...@bioconductor.org (and
> also not in the spam box).
>
> I tried the BiocCredentials app as in the attached print screen, using
> the same email from my r-project.org mailing list membership, and
> informed in my packages.
>
> I don't know if this problem is some "shadow" from a time before the
> git transition, so I revised my emails and found my very 1st
> credential, the subversion user ID was "m.castro"; not sure if this
> information would help to identify the problem. Sorry to bother you
> with this apparent simple problem, but I dont know why this is
> happening.
>
> Many thanks,
>
> Mauro
>
> On Tue, 4 May 2021 at 10:02, Nitesh Turaga  wrote:
> >
> > Hi
> >
> >
> >
> > Have you checked your Spam or junk mail?
> >
> >
> >
> > You should have received an email from maintai...@bioconductor.org -  
> > Bioconductor git credentials administrator.
> >
> >
> >
> > If it’s being filtered or something, could you please try to do the 
> > password reset again? I checked our end, and everything seems to be in 
> > place.
> >
> >
> >
> > Best,
> >
> >
> >
> > Nitesh
> >
> >
> >
> > From: Bioc-devel  on behalf of mauro 
> > castro 
> > Date: Tuesday, May 4, 2021 at 8:48 AM
> > To: Bioc-devel 
> > Subject: [Bioc-devel] Log in to the BiocCredentials app
> >
> > Hi All,
> >
> > I’m a Bioconductor package maintainer, but I could not log in to the
> > BiocCredentials app to submit a new SSH public key. A already tried to
> > reset the password, but I didn't receive any email with instructions
> > for setting a password.
> >
> > https://git.bioconductor.org/BiocCredentials/password_reset/
> >
> > The email I entered is the same associated with all my packages
> > (mauro.a.cas...@gmail.com). Here a list of packages for which I am
> > maintainer:
> > - RedeR, RTN, RTNduals, RTNsurvival, geneplast, Fletcher2013a, Fletcher2013b
> >
> > Please, let me know if I am missing any steps.
> >
> > Many thanks,
> >
> > Mauro
> >
> > ___
> > Bioc-devel@r-project.org mailing list
> > https://stat.ethz.ch/mailman/listinfo/bioc-devel

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Re: [Bioc-devel] Log in to the BiocCredentials app

2021-05-04 Thread mauro castro
Hi Nitesh,

Thank you for your email. I tried to do the password reset again, but
still haven't received an email from maintai...@bioconductor.org (and
also not in the spam box).

I tried the BiocCredentials app as in the attached print screen, using
the same email from my r-project.org mailing list membership, and
informed in my packages.

I don't know if this problem is some "shadow" from a time before the
git transition, so I revised my emails and found my very 1st
credential, the subversion user ID was "m.castro"; not sure if this
information would help to identify the problem. Sorry to bother you
with this apparent simple problem, but I dont know why this is
happening.

Many thanks,

Mauro

On Tue, 4 May 2021 at 10:02, Nitesh Turaga  wrote:
>
> Hi
>
>
>
> Have you checked your Spam or junk mail?
>
>
>
> You should have received an email from maintai...@bioconductor.org -  
> Bioconductor git credentials administrator.
>
>
>
> If it’s being filtered or something, could you please try to do the password 
> reset again? I checked our end, and everything seems to be in place.
>
>
>
> Best,
>
>
>
> Nitesh
>
>
>
> From: Bioc-devel  on behalf of mauro castro 
> 
> Date: Tuesday, May 4, 2021 at 8:48 AM
> To: Bioc-devel 
> Subject: [Bioc-devel] Log in to the BiocCredentials app
>
> Hi All,
>
> I’m a Bioconductor package maintainer, but I could not log in to the
> BiocCredentials app to submit a new SSH public key. A already tried to
> reset the password, but I didn't receive any email with instructions
> for setting a password.
>
> https://git.bioconductor.org/BiocCredentials/password_reset/
>
> The email I entered is the same associated with all my packages
> (mauro.a.cas...@gmail.com). Here a list of packages for which I am
> maintainer:
> - RedeR, RTN, RTNduals, RTNsurvival, geneplast, Fletcher2013a, Fletcher2013b
>
> Please, let me know if I am missing any steps.
>
> Many thanks,
>
> Mauro
>
> ___
> Bioc-devel@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel
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[Bioc-devel] Log in to the BiocCredentials app

2021-05-04 Thread mauro castro
Hi All,

I’m a Bioconductor package maintainer, but I could not log in to the
BiocCredentials app to submit a new SSH public key. A already tried to
reset the password, but I didn't receive any email with instructions
for setting a password.

https://git.bioconductor.org/BiocCredentials/password_reset/

The email I entered is the same associated with all my packages
(mauro.a.cas...@gmail.com). Here a list of packages for which I am
maintainer:
- RedeR, RTN, RTNduals, RTNsurvival, geneplast, Fletcher2013a, Fletcher2013b

Please, let me know if I am missing any steps.

Many thanks,

Mauro

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