Re: [galaxy-dev] AWS launch error

[Nuwan Goonasekera]

Hi David,

I'm not much of a user of this functionality but I suspect that it's
failing in the old launcher because you can't enter the cluster name
manually as I understand it. You have to wait for the list of clusters to
be retrieved, and then make the appropriate selection from the dropdown,
which can be quite time consuming if you have a large number of clusters.
This is because the dropdown displays the cloudman cluster name, but uses
the aws bucket name as the key.

In the new launcher, a similar limitation exists - but I also suspect
there's a bug - we are keying on an incorrect value. I've created a new
issue to track this: https://github.com/galaxyproject/cloudlaunch-ui/
issues/21

cheers,
/Nuwan

On Thu, Nov 9, 2017 at 6:55 AM, David Kovalic  wrote:

> Enis,
>
> To clarify, our credentials are in the beta system which dosn't work.
>
> To me it seems like an aws authentication issue.
>
> David
>
> On Wed, Nov 8, 2017, 7:22 PM David Kovalic  wrote:
>
>> Enis,
>>
>> Yes our credentials are in the beta system.
>>
>> Lmk if you need me to do anything to help troubleshoot.
>>
>> Right now we are recreating systems through aws. Are there docs for
>> running cloudman from cli? This would get us going in the short term.
>>
>> David
>>
>> On Wed, Nov 8, 2017, 6:33 PM Enis Afgan  wrote:
>>
>>> Hi David,
>>> Do you perhaps have credentials stored on the beta server? If not, and
>>> don't mind storing them, you can try that. I'm not having an issue at the
>>> moment but I know Nuwan has done some changes recently that I did not catch
>>> up with yet. CC'ing him in case he has additional input.
>>>
>>> On Tue, Nov 7, 2017 at 12:53 PM, David Kovalic 
>>> wrote:
>>>
 Enis,

 I am having issues launching previously existing clusters today, here
 is some more info:

- I go to https://launch.usegalaxy.org/launch
- I fill in the required AWS credentials
- I click on "Choose a saved cluster"
- the page goes into a loop trying to retrieve the 'Saved Cluster'
information to populate  the drop down list
- I can terminate this loop by clicking on the "x"
- I can enter the cluster name manually
- The cluster bucket entered does exist on my S3
- After entering the cluster name manually I click "Create a
cluster"
- The next page is shown "Please wait, your scalable cluster is
starting on the Amazon - Virginia cloud."
- I see no instance stared on the AWS console

 I have similar issues on the new page "https://beta.launch.
 usegalaxy.org/", on this page my previous clusters are not shown.

 Nothing has changed on my end, to my knoledge… Any ideas? Need any more
 information from my end?

 lmk and thanks,

 David



 David Kovalic Ph.D.   President, Analome
 phone: +314.496.8808
 web: www.analome.com
 email: kova...@analome.com
 



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Re: [galaxy-dev] AWS launch error

[David Kovalic]

Enis,

To clarify, our credentials are in the beta system which dosn't work.

To me it seems like an aws authentication issue.

David

On Wed, Nov 8, 2017, 7:22 PM David Kovalic  wrote:

> Enis,
>
> Yes our credentials are in the beta system.
>
> Lmk if you need me to do anything to help troubleshoot.
>
> Right now we are recreating systems through aws. Are there docs for
> running cloudman from cli? This would get us going in the short term.
>
> David
>
> On Wed, Nov 8, 2017, 6:33 PM Enis Afgan  wrote:
>
>> Hi David,
>> Do you perhaps have credentials stored on the beta server? If not, and
>> don't mind storing them, you can try that. I'm not having an issue at the
>> moment but I know Nuwan has done some changes recently that I did not catch
>> up with yet. CC'ing him in case he has additional input.
>>
>> On Tue, Nov 7, 2017 at 12:53 PM, David Kovalic 
>> wrote:
>>
>>> Enis,
>>>
>>> I am having issues launching previously existing clusters today, here is
>>> some more info:
>>>
>>>- I go to https://launch.usegalaxy.org/launch
>>>- I fill in the required AWS credentials
>>>- I click on "Choose a saved cluster"
>>>- the page goes into a loop trying to retrieve the 'Saved Cluster'
>>>information to populate  the drop down list
>>>- I can terminate this loop by clicking on the "x"
>>>- I can enter the cluster name manually
>>>- The cluster bucket entered does exist on my S3
>>>- After entering the cluster name manually I click "Create a cluster"
>>>- The next page is shown "Please wait, your scalable cluster is
>>>starting on the Amazon - Virginia cloud."
>>>- I see no instance stared on the AWS console
>>>
>>> I have similar issues on the new page "
>>> https://beta.launch.usegalaxy.org/";, on this page my previous clusters
>>> are not shown.
>>>
>>> Nothing has changed on my end, to my knoledge… Any ideas? Need any more
>>> information from my end?
>>>
>>> lmk and thanks,
>>>
>>> David
>>>
>>>
>>>
>>> David Kovalic Ph.D.   President, Analome
>>> phone: +314.496.8808
>>> web: www.analome.com
>>> email: kova...@analome.com
>>> 
>>>
>>>
>>>
>>> On Fri, Nov 3, 2017 11:00 AM, galaxy-dev-requ...@lists.galaxyproject.org
>>> wrote:
>>>
 Send galaxy-dev mailing list submissions to

 galaxy-dev@lists.galaxyproject.org


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 1. Re: AWS launch error (Enis Afgan)

 2. Enable viewing of large HTML files (Peter Briggs)

 3. Re: Enable viewing of large HTML files (Martin Čech)

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>> --
>
>
> David Kovalic Ph.D.   President, Analome
> phone: +314.496.8808
> web: www.analome.com
> email: kova...@analome.com
> 
>
-- 


David Kovalic Ph.D.   President, Analome
phone: +314.496.8808
web: www.analome.com
email: kova...@analome.com

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Re: [galaxy-dev] AWS launch error

[David Kovalic]

Enis,

Yes our credentials are in the beta system.

Lmk if you need me to do anything to help troubleshoot.

Right now we are recreating systems through aws. Are there docs for running
cloudman from cli? This would get us going in the short term.

David

On Wed, Nov 8, 2017, 6:33 PM Enis Afgan  wrote:

> Hi David,
> Do you perhaps have credentials stored on the beta server? If not, and
> don't mind storing them, you can try that. I'm not having an issue at the
> moment but I know Nuwan has done some changes recently that I did not catch
> up with yet. CC'ing him in case he has additional input.
>
> On Tue, Nov 7, 2017 at 12:53 PM, David Kovalic 
> wrote:
>
>> Enis,
>>
>> I am having issues launching previously existing clusters today, here is
>> some more info:
>>
>>- I go to https://launch.usegalaxy.org/launch
>>- I fill in the required AWS credentials
>>- I click on "Choose a saved cluster"
>>- the page goes into a loop trying to retrieve the 'Saved Cluster'
>>information to populate  the drop down list
>>- I can terminate this loop by clicking on the "x"
>>- I can enter the cluster name manually
>>- The cluster bucket entered does exist on my S3
>>- After entering the cluster name manually I click "Create a cluster"
>>- The next page is shown "Please wait, your scalable cluster is
>>starting on the Amazon - Virginia cloud."
>>- I see no instance stared on the AWS console
>>
>> I have similar issues on the new page "https://beta.launch.usegalaxy.org/";,
>> on this page my previous clusters are not shown.
>>
>> Nothing has changed on my end, to my knoledge… Any ideas? Need any more
>> information from my end?
>>
>> lmk and thanks,
>>
>> David
>>
>>
>>
>> David Kovalic Ph.D.   President, Analome
>> phone: +314.496.8808
>> web: www.analome.com
>> email: kova...@analome.com
>> 
>>
>>
>>
>> On Fri, Nov 3, 2017 11:00 AM, galaxy-dev-requ...@lists.galaxyproject.org
>> wrote:
>>
>>> Send galaxy-dev mailing list submissions to
>>>
>>> galaxy-dev@lists.galaxyproject.org
>>>
>>>
>>> To subscribe or unsubscribe via the World Wide Web, visit
>>>
>>> https://lists.galaxyproject.org/listinfo/galaxy-dev
>>>
>>> or, via email, send a message with subject or body 'help' to
>>>
>>> galaxy-dev-requ...@lists.galaxyproject.org
>>>
>>>
>>> You can reach the person managing the list at
>>>
>>> galaxy-dev-ow...@lists.galaxyproject.org
>>>
>>>
>>> When replying, please edit your Subject line so it is more specific
>>>
>>> than "Re: Contents of galaxy-dev digest..."
>>>
>>> HEY! This is important! If you reply to a thread in a digest, please
>>>
>>> 1. Change the subject of your response from "Galaxy-dev Digest Vol ..."
>>> to the original subject for the thread.
>>>
>>> 2. Strip out everything else in the digest that is not part of the
>>> thread you are responding to.
>>>
>>>
>>> Why?
>>>
>>> 1. This will keep the subject meaningful. People will have some idea
>>> from the subject line if they should read it or not.
>>>
>>> 2. Not doing this greatly increases the number of emails that match
>>> search queries, but that aren't actually informative.Today's Topics:
>>>
>>>
>>> 1. Re: AWS launch error (Enis Afgan)
>>>
>>> 2. Enable viewing of large HTML files (Peter Briggs)
>>>
>>> 3. Re: Enable viewing of large HTML files (Martin Čech)
>>>
>>> ___
>>>
>>> galaxy-dev mailing list
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>>> https://lists.galaxyproject.org/listinfo/galaxy-dev
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>>> To search Galaxy mailing lists use the unified search at:
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>>
>> ___
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>
>
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> --


David Kovalic Ph.D.   President, Analome
phone: +314.496.8808
web: www.analome.com
email: kova...@analome.com

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Re: [galaxy-dev] AWS launch error

[Enis Afgan]

Hi David,
Do you perhaps have credentials stored on the beta server? If not, and
don't mind storing them, you can try that. I'm not having an issue at the
moment but I know Nuwan has done some changes recently that I did not catch
up with yet. CC'ing him in case he has additional input.

On Tue, Nov 7, 2017 at 12:53 PM, David Kovalic  wrote:

> Enis,
>
> I am having issues launching previously existing clusters today, here is
> some more info:
>
>- I go to https://launch.usegalaxy.org/launch
>- I fill in the required AWS credentials
>- I click on "Choose a saved cluster"
>- the page goes into a loop trying to retrieve the 'Saved Cluster'
>information to populate  the drop down list
>- I can terminate this loop by clicking on the "x"
>- I can enter the cluster name manually
>- The cluster bucket entered does exist on my S3
>- After entering the cluster name manually I click "Create a cluster"
>- The next page is shown "Please wait, your scalable cluster is
>starting on the Amazon - Virginia cloud."
>- I see no instance stared on the AWS console
>
> I have similar issues on the new page "https://beta.launch.usegalaxy.org/";,
> on this page my previous clusters are not shown.
>
> Nothing has changed on my end, to my knoledge… Any ideas? Need any more
> information from my end?
>
> lmk and thanks,
>
> David
>
>
>
> David Kovalic Ph.D.   President, Analome
> phone: +314.496.8808
> web: www.analome.com
> email: kova...@analome.com
> 
>
>
>
> On Fri, Nov 3, 2017 11:00 AM, galaxy-dev-requ...@lists.galaxyproject.org
> wrote:
>
>> Send galaxy-dev mailing list submissions to
>>
>> galaxy-dev@lists.galaxyproject.org
>>
>>
>> To subscribe or unsubscribe via the World Wide Web, visit
>>
>> https://lists.galaxyproject.org/listinfo/galaxy-dev
>>
>> or, via email, send a message with subject or body 'help' to
>>
>> galaxy-dev-requ...@lists.galaxyproject.org
>>
>>
>> You can reach the person managing the list at
>>
>> galaxy-dev-ow...@lists.galaxyproject.org
>>
>>
>> When replying, please edit your Subject line so it is more specific
>>
>> than "Re: Contents of galaxy-dev digest..."
>>
>> HEY! This is important! If you reply to a thread in a digest, please
>>
>> 1. Change the subject of your response from "Galaxy-dev Digest Vol ..."
>> to the original subject for the thread.
>>
>> 2. Strip out everything else in the digest that is not part of the thread
>> you are responding to.
>>
>>
>> Why?
>>
>> 1. This will keep the subject meaningful. People will have some idea from
>> the subject line if they should read it or not.
>>
>> 2. Not doing this greatly increases the number of emails that match
>> search queries, but that aren't actually informative.Today's Topics:
>>
>>
>> 1. Re: AWS launch error (Enis Afgan)
>>
>> 2. Enable viewing of large HTML files (Peter Briggs)
>>
>> 3. Re: Enable viewing of large HTML files (Martin Čech)
>>
>> ___
>>
>> galaxy-dev mailing list
>>
>> galaxy-dev@lists.galaxyproject.org
>>
>> https://lists.galaxyproject.org/listinfo/galaxy-dev
>>
>>
>> To search Galaxy mailing lists use the unified search at:
>>
>> http://galaxyproject.org/search/mailinglists/
>>
>
> ___
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> in your mail client.  To manage your subscriptions to this
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[galaxy-dev] AWS launch error

[David Kovalic]

Enis,
I am having issues launching previously existing clusters today, here is some
more info: * I go to https://launch.usegalaxy.org/launch
 * I fill in the required AWS credentials
 * I click on "Choose a saved cluster"
 * the page goes into a loop trying to retrieve the 'Saved Cluster'
   information to populate  the drop down list
 * I can terminate this loop by clicking on the "x"
 * I can enter the cluster name manually
 * The cluster bucket entered does exist on my S3
 * After entering the cluster name manually I click "Create a cluster"
 * The next page is shown "Please wait, your scalable cluster is
   starting on the Amazon - Virginia cloud."
 * I see no instance stared on the AWS console

I have similar issues on the new page "https://beta.launch.usegalaxy.org/";, on
this page my previous clusters are not shown.
Nothing has changed on my end, to my knoledge… Any ideas? Need any more
information from my end?
lmk and thanks,
David


David Kovalic Ph.D.President,Analomephone:+314.496.8808web:www.analome.comemail:

kova...@analome.com






On Fri, Nov 3, 2017 11:00 AM, galaxy-dev-requ...@lists.galaxyproject.org  wrote:
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1. Change the subject of your response from "Galaxy-dev Digest Vol ..." to the
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2. Strip out everything else in the digest that is not part of the thread you
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Why?

1. This will keep the subject meaningful. People will have some idea from the
subject line if they should read it or not.

2. Not doing this greatly increases the number of emails that match search
queries, but that aren't actually informative.Today's Topics:




  1. Re: AWS launch error (Enis Afgan)

  2. Enable viewing of large HTML files (Peter Briggs)

  3. Re: Enable viewing of large HTML files (Martin Čech)

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Re: [galaxy-dev] AWS launch error

[Enis Afgan]

Hi Sijung,
Sorry to hear about the trouble you're having. However, I'm not able to
replicate this issue (across 2 computers and 3 browsers) so can you please
share a bit more info from your side. To start, what operating system and
browser are you using? Also, can you open the Inspect console in the
browser and see if there are errors being reported as well as what those
are? Finally, can you make sure the limits for instance type & numbers on
your AWS account are not reached.

On Thu, Nov 2, 2017 at 7:15 AM, Sijung Yun 
wrote:

> To whom it may concern,
>
> Currently, both of launch.usegalaxy.org and beta.launch.usegalaxy.org has
> error in launching, so it is not possible to launch at this time.  Could
> you solve this problem as soon as possible?  I attach the snapshots.
> Thanks a lot.
>
> Sincerely,
>
> Sijung
>
> --
> Sijung Yun, Ph.D.
>
> Founder and CEO
> Yotta Biomed, LLC.
> Bioinformatics Unlimited
> yottabiomed.com
> Cell: 240-672-3937 <(240)%20672-3937>
>
>
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