Re: [Ifeffit] Problem with importing projects from ATHENA into ARTEMIS

2014-04-07 Thread Matt Newville
Hi Alexander,

I think you may not alone in having this issue.   You should be using
normalized chi(k) in Artemis, but I don't think Artemis would be
reading chi(k) from the project file incorrectly Perhaps there is
something strange about how you're doing the normalization?   Or
perhaps it is just a question of what k-weighting is being used for
the plot. Unfortunately, the PNGs I see have been cropped and don't
show the labels of the axes.

I'm sending this to the Ifeffit mailing list, where you'll probably
get a more complete answer.

On Mon, Apr 7, 2014 at 9:57 AM, Britz, Alexander
alexander.br...@xfel.eu wrote:
 Dear Mr. Newville,

 I came across a problem when I import an ATHENA project after normalization 
 into ARTEMIS. Maybe you could tell me who to contact about this problem. Let 
 me try to explain it in few words:

 I normalize my EXAFS data in ATHENA and safe it a s a .prj file. When I open 
 the .prj file in ARTEMIS I noticed, that the amplitude of some oscillations 
 have changed. When I save the chi(k) as .txt, this problem does not occur. 
 When I open the chi(k) text file in ARTEMIS, the normalization and the 
 amplitude of the oscillations are exactly the same as in ATHEN.

 I have attached a .png file for the EXAFS in k-space. It is the same .prj 
 file, one time opened in ARTEMIS, one time in ATHENA. To be more specific, 
 the amplitude of the oscillation at k=3 is -1.4 and -1.6, respectively.

 Thank you very much for your help in advance!

 Best regards from Hamburg,
 Alexander

 
 Alexander Britz
 European XFEL GmbH
 alexander.br...@xfel.eu
 Tel. +49 (0)40 8998-6986
 Fax +49 (0)40 8998-1905
 www.xfel.eu/de

 Postadresse: Notkestraße 85, 22607 Hamburg
 Sitz: Albert-Einstein-Ring 19, 22761 Hamburg

 Geschäftsführer: Prof. Dr. Massimo Altarelli, Dr. Claudia Burger
 Registriert als European X-Ray Free-Electron Laser Facility GmbH
 beim Amtsgericht Hamburg, HRB 65





-- 
--Matt Newville newville at cars.uchicago.edu 630-252-0431

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Re: [Ifeffit] Problem with importing projects from ATHENA into ARTEMIS

2014-04-07 Thread Bruce Ravel


There are a number of known problems with the current version of 
Artemis.  It's pretty much impossible for me to troubleshoot without 
examples being posted to the mailing list.


B

On 04/07/2014 11:17 AM, Matt Newville wrote:

Hi Alexander,

I think you may not alone in having this issue.   You should be using
normalized chi(k) in Artemis, but I don't think Artemis would be
reading chi(k) from the project file incorrectly Perhaps there is
something strange about how you're doing the normalization?   Or
perhaps it is just a question of what k-weighting is being used for
the plot. Unfortunately, the PNGs I see have been cropped and don't
show the labels of the axes.

I'm sending this to the Ifeffit mailing list, where you'll probably
get a more complete answer.

On Mon, Apr 7, 2014 at 9:57 AM, Britz, Alexander
alexander.br...@xfel.eu wrote:

Dear Mr. Newville,

I came across a problem when I import an ATHENA project after normalization 
into ARTEMIS. Maybe you could tell me who to contact about this problem. Let me 
try to explain it in few words:

I normalize my EXAFS data in ATHENA and safe it a s a .prj file. When I open 
the .prj file in ARTEMIS I noticed, that the amplitude of some oscillations 
have changed. When I save the chi(k) as .txt, this problem does not occur. When 
I open the chi(k) text file in ARTEMIS, the normalization and the amplitude of 
the oscillations are exactly the same as in ATHEN.

I have attached a .png file for the EXAFS in k-space. It is the same .prj file, 
one time opened in ARTEMIS, one time in ATHENA. To be more specific, the 
amplitude of the oscillation at k=3 is -1.4 and -1.6, respectively.

Thank you very much for your help in advance!

Best regards from Hamburg,
Alexander


Alexander Britz
European XFEL GmbH
alexander.br...@xfel.eu
Tel. +49 (0)40 8998-6986
Fax +49 (0)40 8998-1905
www.xfel.eu/de

Postadresse: Notkestraße 85, 22607 Hamburg
Sitz: Albert-Einstein-Ring 19, 22761 Hamburg

Geschäftsführer: Prof. Dr. Massimo Altarelli, Dr. Claudia Burger
Registriert als European X-Ray Free-Electron Laser Facility GmbH
beim Amtsgericht Hamburg, HRB 65









--
 Bruce Ravel   bra...@bnl.gov

 National Institute of Standards and Technology
 Synchrotron Science Group at NSLS --- Beamlines U7A, X24A, X23A2
 Building 535A
 Upton NY, 11973

 Homepage:http://xafs.org/BruceRavel
 Software:https://github.com/bruceravel
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