Hi, thanks, that's what puzzled when I saw the reference to 1.3, but the
LD_LIBRARY_PATH was set to point
to the respective version, i.e. 1.3.2 or 1.3.3 and the 1.3 executables were not
in the PATH.
Are there any other env variables or . files that need to be set ?
Benedikt
-Original Message-
From: users-boun...@open-mpi.org on behalf of Ralph Castain
Sent: Sun 18.10.2009 6:04
To: Open MPI Users
Subject: Re: [OMPI users] mpirun failure
Looks to me like you may be picking up an earlier version when you
launch. At least, when I look at the error message, it says that it
came from a file in the openmpi-1.3 directory tree. Yet you say you
installed 1.3.2 and 1.3.3.
Any chance your ld_library_path is pointing at the older version?
On Oct 17, 2009, at 11:29 AM, Oswald Benedikt wrote:
> Dear open-mpi users / developers, maybe this problem has been
> treated before but at least I can not find it:
>
> I have tried both open mpi 1.3.2 and 1.3.3 on Mac OS X (10.5.8).
> Compilation and installation of openmpi
> works well, also compilation and linking of users applications.
> However, when I want to start an application
> with mpirun, it crashes, both for open mpi 1.3.3. and 1.3.2 as
> follows:
>
>
>
> benedikt-oswalds-macbook-pro:mieScatteringDispersive benediktoswald$
> mpirun -np 2 ../../../hades3d/hades3d --option-
> file=mieScatteringDispersive.job
> [benedikt-oswalds-macbook-pro.local:50793] [[7314,1],0]
> ORTE_ERROR_LOG: Not found in file ../../../../../openmpi-1.3/orte/
> mca/ess/env/ess_env_module.c at line 235
> [benedikt-oswalds-macbook-pro.local:50793] [[7314,1],0]
> ORTE_ERROR_LOG: Not found in file ../../../../../openmpi-1.3/orte/
> mca/ess/env/ess_env_module.c at line 261
> [benedikt-oswalds-macbook-pro.local:50794] [[7314,1],1]
> ORTE_ERROR_LOG: Value out of bounds in file ../../../../openmpi-1.3/
> orte/mca/ess/base/ess_base_nidmap.c at line 153
> [benedikt-oswalds-macbook-pro.local:50794] [[7314,1],1]
> ORTE_ERROR_LOG: Not found in file ../../../../../openmpi-1.3/orte/
> mca/ess/env/ess_env_module.c at line 235
> [benedikt-oswalds-macbook-pro.local:50794] [[7314,1],1]
> ORTE_ERROR_LOG: Value out of bounds in file ../../../../openmpi-1.3/
> orte/mca/ess/base/ess_base_nidmap.c at line 153
> [benedikt-oswalds-macbook-pro.local:50794] [[7314,1],1]
> ORTE_ERROR_LOG: Not found in file ../../../../../openmpi-1.3/orte/
> mca/ess/env/ess_env_module.c at line 261
> --
> It looks like MPI_INIT failed for some reason; your parallel process
> is
> likely to abort. There are many reasons that a parallel process can
> fail during MPI_INIT; some of which are due to configuration or
> environment
> problems. This failure appears to be an internal failure; here's some
> additional information (which may only be relevant to an Open MPI
> developer):
>
> orte_grpcomm_modex failed
> --> Returned "Not found" (-13) instead of "Success" (0)
> --
> *** An error occurred in MPI_Init
> *** before MPI was initialized
> *** MPI_ERRORS_ARE_FATAL (your MPI job will now abort)
> [benedikt-oswalds-macbook-pro.local:50794] Abort before MPI_INIT
> completed successfully; not able to guarantee that all other
> processes were killed!
> [benedikt-oswalds-macbook-pro.local:50794] [[7314,1],1]
> ORTE_ERROR_LOG: Not found in file ../../../../../openmpi-1.3/orte/
> mca/ess/env/ess_env_module.c at line 297
> [benedikt-oswalds-macbook-pro.local:50794] [[7314,1],1]
> ORTE_ERROR_LOG: Not found in file ../../../../../openmpi-1.3/orte/
> mca/grpcomm/bad/grpcomm_bad_module.c at line 559
> --
> mpirun has exited due to process rank 1 with PID 50794 on
> node benedikt-oswalds-macbook-pro.local exiting without calling
> "finalize". This may
> have caused other processes in the application to be
> terminated by signals sent by mpirun (as reported here).
> --
>
>
> Can anyone comment on this ? Is this a basic installation or path
> problem ?
>
> openmpi 1.3 does not show this problem.
>
> Thanks, Benedikt
>
>
>
>
> --
> Benedikt Oswald, Dr. sc. techn., dipl. El. Ing. ETH, www.psi.ch,
> Computational Accelerator Scientist
> Paul Scherrer Institute (PSI), CH-5232 Villigen, Suisse,
>