Re: [Bioc-devel] Issue Reproducing BioC 3.11 COHCAP Error Message

Hi Martin, That is probably what happened. Thank you again for your help! Sincerely, Charles -Original Message- From: Martin Morgan Sent: Friday, March 20, 2020 1:38 PM To: Charles Warden ; Alexey Sergushichev Cc: bioc-devel@r-project.org Subject: Re: [Bioc-devel] Issue Reproducing

Re: [Bioc-devel] Issue Reproducing BioC 3.11 COHCAP Error Message

yes, use 1.33.1. Maybe you had a space between the '.' and the '1' or similar, '1.33. 1' ? This generates an error ** using staged installation Error : Invalid DESCRIPTION file Malformed package version. See section 'The DESCRIPTION file' in the 'Writing R Extensions' manual. ERROR:

Re: [Bioc-devel] Issue Reproducing BioC 3.11 COHCAP Error Message

Hi Martin, I am currently having difficulty reproducing my earlier error (which I think didn’t even get to the step of testing the demo code). So, I think the short answer is that I should just use version 1.33.1. In my search history, I can tell that I Googled "R Malformed package version,"

Re: [Bioc-devel] Issue Reproducing BioC 3.11 COHCAP Error Message

Can you be precise about the concern about 1.33.1 as a version number (what precise note / error / warning you received)? This scheme is very standard for package versions, and as you see enforced (for many years!) by Bioconductor. Martin On 3/20/20, 4:03 PM, "Bioc-devel on behalf of Charles

Re: [Bioc-devel] Issue Reproducing BioC 3.11 COHCAP Error Message

Hi Everybody, I think changing that read.table() parameter fixed the main issue. However, when I tested my code, R used a different way to note versions in R-v.4.0.0. For example, in order to clear a message from “R CMD check” or “R CMD build”, I had to say the version was 1.33-1 (instead of

Re: [Bioc-devel] proper way to define an S4 method for 'plot'

FYI - I can reproduce this on linux with R Under development (unstable) (2020-03-19 r78011) From: Bioc-devel on behalf of Vincent Carey Sent: 16 March 2020 23:52 To: bioc-devel Subject: [Bioc-devel] proper way to define an S4 method for 'plot' I just

[Bioc-devel] INSPEcT vignette building issue

Hello, I am one of the maintainers of the INSPEcT package. I noticed that the vignette building on tokay2 resulted in a timeout. So, I tried to build the document on a Windows 10 64 bit machine with the development version of Bioconductor and R4.0. In this configuration, everything run smoothly

Re: [Bioc-devel] R CMD build error for 3.10 (but not 3.11)

We appreciate your effort and contributions to Bioconductor. Cheers, Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 From: L Rutter

Re: [Bioc-devel] R CMD build error for 3.10 (but not 3.11)

Dear Lori and Nitesh: Thank you so much for your help. I was able to make the changes and fix the error. It seems my release version is also now building without error . Your feedback has helped me a lot and allowed me to get this