A couple more things about this: The Hits class is defined in the
S4Vectors package. The changes to the internals of the class happened
in BioC 3.3, almost 1 year ago. The NEWS file in S4Vectors has an entry
under "CHANGES IN VERSION 0.10.0" that describes these changes:
o Many changes to the
Hi Nathan,
Direct slot access is strongly discouraged, for this very reason. Please
stick to using the accessor.
And yes, Hits was redefined in terms of a graph model last devel cycle.
Michael
On Tue, Dec 20, 2016 at 12:16 PM, Nathan Sheffield
wrote:
> Did the findOverlaps return object get a
Did the findOverlaps return object get a @queryHits slot removed recently?
I recently got this error running some of my code:
Error: no slot of name "queryHits" for this object of class
"SortedByQueryHits"
My workflow is basically,
fo = findOverlaps(...)
fo@queryHits
Using queryHits(fo) wor