Re: [galaxy-dev] Trackster error: not able to find the chrom len file

2013-06-11 Thread Jeremy Goecks
>> Trackster displays an error after opening a saved view: >> >> *** >> Error: The requested genome file >> (/home/galaxy/galaxy-dist/tool-data/shared/ucsc/chrom/dm3.len) could not be >> opened. Exiting! >> sort: write failed: standard output: Broken pipe >> sort: write error

Re: [galaxy-dev] Trackster error: not able to find the chrom len file

2013-06-11 Thread Joachim Jacob | VIB |
I just have symlinked the files to the right location. Is this the correct solution? Further, I had to remove the 'chr' in the chrom len files to make it work. Cheers, Joachim Joachim Jacob Contact details: http://www.bits.vib.be/index.php/about/80-team On 06/11/2013 03:26 PM, Joachim Jaco

[galaxy-dev] Trackster error: not able to find the chrom len file

2013-06-11 Thread Joachim Jacob | VIB |
Dear all, I updated to the latest Galaxy stable code, and updated the datatypes_conf.xml. Trackster displays an error after opening a saved view: *** Error: The requested genome file (/home/galaxy/galaxy-dist/tool-data/shared/ucsc/chrom/dm3.len) could not be opened. Exi