[galaxy-dev] QIIME tools for Galaxy (WIP, call for collaborators)

2015-10-05 Thread Lance Parsons
I was recently asked if I could provide a QIIME analysis pipeline for 16S data in Galaxy using tools in the QIIME pipeline (http://qiime.org/). I did a bit of looking around for existing Galaxy wrappers and found an application that generates the wrappers for QIIME scripts for Galaxy

[galaxy-dev] External Pipeline Cleanup

2015-10-05 Thread Ryan G
Hi all - For various reasons, we've had to implement our pipelines external to Galaxy, but still give Galaxy the ability to run them. I've accomplished this by having the Galaxy tool wrapper call the external app to launch the pipelines. My problem is that when a user aborts the tool, the tool