Re: [galaxy-user] does Galaxy record tool versions?

2011-01-28 Thread Yury Bukhman
Using history annotation will only work well if it could be automatically populated with tool versions.  Leaving it up to the user to insert them manually won't work because people would forget to do this, especially if they are working under time pressures.  In my ideal world, the tool version

Re: [galaxy-user] does Galaxy record tool versions?

2011-01-28 Thread Roman Valls
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Hi Kanwei, I'm very much interested in this feature, i.e "to keep track of tool versions that ran automatically". What do you mean by "history annotation" ? Is it some custom editable field by the user or are you planning to set this automatically wh

Re: [galaxy-user] does Galaxy record tool versions?

2011-01-27 Thread Kanwei Li
Hmm, actually the version is the version of the tool wrapper. Unless the wrapper version reflects the actual tool version, we're not keeping track of the tool version as we're simply running the command. Perhaps history annotation is the solution here. -Kanwei On Thu, Jan 27, 2011 at 6:17 PM, Kan

Re: [galaxy-user] does Galaxy record tool versions?

2011-01-27 Thread Kanwei Li
Hi Yury, Yes, the "jobs" table keeps track of the tool version run. I am implementing a new "view details" feature (already on trunk) and I will add the tool version to the information displayed. Thanks, Kanwei On Thu, Jan 27, 2011 at 5:57 PM, Yury Bukhman wrote: > Hi, > > in order to reproduc

[galaxy-user] does Galaxy record tool versions?

2011-01-27 Thread Yury Bukhman
Hi, in order to reproduce an analysis, it's good to know not only what tools were used, but also their versions.  Is there a way to figure that out from a Galaxy history?  I would like to be able to answer questions like "what version of bowtie have I run in an analysis performed 6 months ago?"