I'm trying to analyzing hydrogen bonds between a DNA and protein complex.
When using the -ac option of gmx hbond, I'm getting segmentation faults
which look like an out-of-memory problem.
However, I'm giving the process 64gb of memory, and an additional 64gb of
virtual memory. How memory intenstiv
Hello, I'm using GROMACS 5.1.13 and ran into a problem I've never
encountered before. I've run a simulation on a zinc-finger DNA complex and
defined a group in my index filed called "Protein_DNA" from the default
"Protein" and "DNA" groups. This group should contain 4666 atoms, which it
does.
$gmx