Re: [PyMOL] How to ray trace clipped image without clipping spheres.

Along those lines: The script "SelectClipped" from the PyMOLWiki does a good job here, at least for spheres. http://pymolwiki.org/index.php/SelectClipped Example (after having loaded the script or installed it with the plugin manager): PyMOL> select_clipped PyMOL> hide everything, not clipped

Re: [PyMOL] How to ray trace clipped image without clipping spheres.

# Hey :) # Here is a work around... # First import the numpy module import numpy # Then store the viewing matrix as 6 by 3 numpy array. M=numpy.array(cmd.get_view()).reshape(6,3) # Now place a pseudoatom at the position of the camera # Turn off autozoom to keep the view set auto_zoom, 0 scale=1

Re: [PyMOL] How to ray trace clipped image without clipping spheres.

Hi Yarrow, This is a known problem. We'll try to fix this soon. Cheers, -- Jason On Mon, Mar 11, 2013 at 2:05 PM, Yarrow Madrona wrote: > Hi, > > Does anyone know how to ray trace an image of an active site in sphere > representation that

[PyMOL] How to ray trace clipped image without clipping spheres.

Hi, Does anyone know how to ray trace an image of an active site in sphere representation that is clipped, without getting a weird result that I assume comes from clipping the spheres? It looks like unfilled circles. Thank you -Yarrow -- Yarrow Madrona Graduate Student Molecular Biology and