[PyMOL] transparent sphere

2002-05-13 Thread Michael Sorich
Hi I wish to draw a sphere with either a semi-transparent or mesh surface. I can create a sphere as a cgo, however this has an opaque surface. Any help would be appreciated Michael Sorich PhD Student School of Pharmaceutical, Molecular and Biomedical Sciences University of South Australia E

Re: [PyMOL] transparent sphere

2002-05-13 Thread Ricardo Aparicio
Hi, the PyMOL Current Capabilities (v0.80) include "Transparent surfaces and spheres" (http://pymol.sourceforge.net/) Another option would be use NCSMASK (ccp4) and control the "transparency" level by changing the GRID, it worked for me. Good luck, Ricardo Aparicio PhD Student Brazil M

[PyMOL] Beamtime at Cornell

2002-05-13 Thread Richard Gillilan
I realize this is a bit off topic for this list, but I'm guessing there are a few crystallographers out there who would be interested, who may not subscribe to the CCP4 list. There are x-ray beamtime slots still available before the Summer down period (July, August). Sign up now while they last. P

Re: [PyMOL] transparent sphere

2002-05-13 Thread Warren L. DeLano
On Mon, 13 May 2002, Michael Sorich wrote: > I wish to draw a sphere with either a semi-transparent or mesh surface. > I can create a sphere as a cgo, however this has an opaque surface. > > Any help would be appreciated I haven't added a transparency command to the CGO stream yet, so you'll

[PyMOL] chempy/freemol docs

2002-05-13 Thread Szilveszter Juhos
During the weekend I gave a try to dig into pymol (ie I was thinking how to implement a "PDB wizard" that somebody requested recently. I realized there is no real docs about freemol/chempy so if I want to find out how a molecule is represented I have to use the source - only. It is OK, but wouldit