[R] converting a matrix to array

2014-05-18 Thread Effat Habibi
Dear Sir/ Madam, I have a problem with converting a matrix (247 rows, 16 columns) to an array in R. Would you please help me in this regard. Thank you, E. Habibi __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE

Re: [R] Second axis on bottom of graph

2014-05-18 Thread Hurr
Thanks Jim, I see you are the author of staxlab. In the second staxlab I have tried line=3.5 like in axis, and top.line=3.5, separately, with no apparent effect. We should have to select the second axis somehow. Hurr -- View this message in context: http://r.789695.n4.nabble.com/Second-axis-o

Re: [R] Second axis on bottom of graph

2014-05-18 Thread Jim Lemon
On Sun, 18 May 2014 09:56:03 PM Hurr wrote: > Sorry, I'm enclosing incomplete not-runnable code. > > axis(1,tick=TRUE,at=horTicLocs,labels=rep("",length(horLabels)),padj=0) > staxlab(1,at=horTicLocs,labels=horLabels,srt=90,adj=c(1,0)) > nFrqTicInvls=9; frqTicLocs <- vector(length=nFrqTicInvls+1);

Re: [R] Second axis on bottom of graph

2014-05-18 Thread Hurr
Sorry, I'm enclosing incomplete not-runnable code. axis(1,tick=TRUE,at=horTicLocs,labels=rep("",length(horLabels)),padj=0) staxlab(1,at=horTicLocs,labels=horLabels,srt=90,adj=c(1,0)) nFrqTicInvls=9; frqTicLocs <- vector(length=nFrqTicInvls+1); frqLabels <- vector(length=nFrqTicInvls+1); frqInvl

[R] Testing parallel regression assumption

2014-05-18 Thread caoweina
Dear Rose : I saw your questions about the R function that performs brant test. Have you worked out ? Please give some advice. I need to do the brant test in R . Thank you very much! sincerely! Anna __ R-help@r-project.o

Re: [R] dev-lang/R-3.1.0: biocLite("vsn") removes all files in /

2014-05-18 Thread jwd
On Sun, 18 May 2014 07:16:46 +0200 Juergen Rose wrote: What disappeared are links and three files. The links are recreatable, although they would be better placed in user space rather than under /. Of the three files, the *bz2 appears to be part of a Gentoo release, the second a grub configurat

Re: [R] Is there an easier way than this to list all functions in the global environment?

2014-05-18 Thread arun
Hi, You may also check ?lsf.str() c(lsf.str()) A.K. On Sunday, May 18, 2014 7:27 PM, Peter Alspach wrote: Tena koe Byron Many years ago, I came across the following function by Simon Fear: function (splitby = mode, pos = 1, ...) {     lsout <- ls(pos = pos, ...)     tapply(lsout, sapply(l

Re: [R] Saving the ouput data

2014-05-18 Thread jwd
Or you can try help(sink). JWDougherty __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reprodu

Re: [R] Is there an easier way than this to list all functions in the global environment?

2014-05-18 Thread Peter Alspach
Tena koe Byron Many years ago, I came across the following function by Simon Fear: function (splitby = mode, pos = 1, ...) { lsout <- ls(pos = pos, ...) tapply(lsout, sapply(lsout, function(x) { splitby(get(x)) }), invisible) } from which one can deduce that, given your obj,

[R] Is there an easier way than this to list all functions in the global environment?

2014-05-18 Thread Byron Dom
After an unsuccessful search thru several books plus online documentation, I was unable to find a simple way to do this, so I wrote my own function (see below) to do it.  I'm relatively new to R however, so I'm guessing that there must be an easier way to do it. I want to list all functions a

Re: [R] unable to collate and parse R files for package -- unexpected end of input

2014-05-18 Thread Timothy W. Cook
Yep, found it. I was missing a carriage return in the generator so the closing '}' was ending up on the line above with a comment. Thanks again. On Sun, May 18, 2014 at 5:40 PM, Timothy W. Cook wrote: > Thanks Duncan. Exactly what I needed. A push in the right direction to > finding it. >

Re: [R] unable to collate and parse R files for package -- unexpected end of input

2014-05-18 Thread Timothy W. Cook
Thanks Duncan. Exactly what I needed. A push in the right direction to finding it. I've already found the file and I am sure to find the problem child soon. Cheers, Tim On Sun, May 18, 2014 at 5:24 PM, Duncan Murdoch wrote: > On 18/05/2014, 12:54 PM, Timothy W. Cook wrote: > >> This is the e

Re: [R] unable to collate and parse R files for package -- unexpected end of input

2014-05-18 Thread Duncan Murdoch
On 18/05/2014, 12:54 PM, Timothy W. Cook wrote: This is the error I get attempting to build and install a package I wrote. I am using R Studio (but I did try with R CMDs as well). The file that is blamed in the error is the last file alphabetically. If I remove that file. I get the same error

Re: [R] dev-lang/R-3.1.0: biocLite("vsn") removes all files in /

2014-05-18 Thread peter dalgaard
On 18 May 2014, at 07:38 , Jeff Newmiller wrote: > Then you had best not do it again if you don't like that result. > > 1) This is not the right mailing list for issues having to do with > bioconductor. Please go to the bioconductor mailing list for that. Hmm, this is one case where I'd reall

Re: [R] filename of current device

2014-05-18 Thread Prof Brian Ripley
On 14/05/2014 23:04, Andreas Leha wrote: Hi all, how do I find out about the filename, the currently open (let's say pdf) device is writing to? If I find 'dev.cur()' returning 'pdf 3' when I expect 'nulldevice 1' I would like to know, which file that pdf device is actually targeting. Any help

[R] unable to collate and parse R files for package -- unexpected end of input

2014-05-18 Thread Timothy W. Cook
This is the error I get attempting to build and install a package I wrote. I am using R Studio (but I did try with R CMDs as well). The file that is blamed in the error is the last file alphabetically. If I remove that file. I get the same error on the remaining last file alphabetically. So my

Re: [R] help with xts

2014-05-18 Thread Joshua Ulrich
Using subset assignment with an array usually doesn't work well with xts/zoo objects. Your case wouldn't even work with a matrix because you have NA in your array. In this case, you can achieve the same result using multiplication: pos.neg.1 <- ((cond1 < cond2)*-2+1) test <- test * pos.neg.1 Bes

Re: [R] help with xts

2014-05-18 Thread Bert Gunter
Presumably -z is not defined for an xts class object,z ? (whereas indexing is) -- Bert Bert Gunter Genentech Nonclinical Biostatistics (650) 467-7374 "Data is not information. Information is not knowledge. And knowledge is certainly not wisdom." H. Gilbert Welch On Sun, May 18, 2014 at 7:25

[R] help with xts

2014-05-18 Thread Pete
I have 3 xts objects: test, cond1, cond2 You can download here: https://dl.dropboxusercontent.com/u/102669/obj.rar My problem is very simple. test [ cond1 < cond2] = NA THIS WORKS test [ cond1 < cond2] = -test [ cond1 < cond2] THIS DOESN'T WORKS Why? My objecti

Re: [R] dev-lang/R-3.1.0: biocLite("vsn") removes all files in /

2014-05-18 Thread Martin Morgan
This would be very bad and certainly unintended if it were the responsibility of biocLite. Can we communicate off-list about this? In particular can you report noquote(readLines("http://bioconductor.org/biocLite.R";)) ? Martin Morgan On 05/17/2014 10:16 PM, Juergen Rose wrote: I had the fo

Re: [R] dev-lang/R-3.1.0: biocLite("vsn") removes all files in /

2014-05-18 Thread Uwe Ligges
As alternative, just use R itself for it: chooseBioCmirror() setRepositories() # select BioC repositories here install.packages("vsn") Which should so the trick without any additional tools not shiped with R directly. Best, Uwe Ligges On 18.05.2014 07:38, Jeff Newmiller wrote: Then you h

Re: [R] Discrete and Continuous variables

2014-05-18 Thread Patrick Burns
Perhaps something involving: sapply(dataFrame, function(z) length(unique(z))) Pat On 17/05/2014 17:31, a...@dpi.inpe.br wrote: Hello everybody! I have a data frame with discrete and continuous variables something like this: 011.462707165309.0171912.57041000. 10

Re: [R] How to Optimize two functions together in R

2014-05-18 Thread Suzen, Mehmet
This deals with the multi-objective optimisation. Try MCO and emoa packages. http://stats.stackexchange.com/questions/77580/optimization-of-multiple-objective-functions-with-constraints On 15 May 2014 17:47, Mingxuan Han wrote: > I am trying to minimize two functions with same set of parameter(

Re: [R] Lamperti trnasformation simulation.

2014-05-18 Thread Simon Blomberg
On 17/05/14 19:10, Xuse Chuse wrote: Dear users, I am trying to simulate a Lamperti transformation of a brownian motion: W(e_t). Could anyone give some clue how to do it? Thank you beforehand. Regards, C. [[alternative HTML version deleted]] ___