Re: [slurm-users] Multithreads config

2018-02-16 Thread david martin
Benjamin Redling wrote: Am 16.02.2018 um 15:28 schrieb david martin: *I have a single physical server with :* * *64 cpus (each cpu has 16 cores) * * *480Gb total memory* *NodeNAME= Sockets=1 CoresPerSocket=16 ThreadsPerCore=1 Procs=63 REALMEMORY=48*** *This configuration will not work.

[slurm-users] Multithreads config

2018-02-16 Thread david MARTIN
*Hi,* ** *I have a single physical server with :* ** * *63 cpus (each cpu has 16 cores) * * *480Gb total memory* ** ** ** *NodeNAME= Sockets=1 CoresPerSocket=16 ThreadsPerCore=1 Procs=63 REALMEMORY=48*** ** ** ** ** ** *This configuration will not work. What is should be ?*

[slurm-users] Multithreads config

2018-02-16 Thread david martin
*Hi,* ** *I have a single physical server with :* ** * *63 cpus (each cpu has 16 cores) * * *480Gb total memory* ** ** ** *NodeNAME= Sockets=1 CoresPerSocket=16 ThreadsPerCore=1 Procs=63 REALMEMORY=48*** ** ** ** ** ** *This configuration will not work. What is should be ?*

[slurm-users] Allocate more memory

2018-02-07 Thread david martin
 Hi, I would like to submit a job that requires 3Go. The problem is that I have 70 nodes available each node with 2Gb memory. So the command sbatch --mem=3G will wait for ressources to become available. Can I run sbatch and tell the cluster to use the 3Go out of the 70Go available or is

[slurm-users] LAST TASK ID

2018-02-06 Thread david martin
Hi, I´m running a batch array script and would like to execute a command after the last task #SBATCH --array 1-10%10:1 sh myscript.R inputdir/file.${SLURM_ARRAY_TASK_ID} # Would like to run a command after the last task For exemple when i was using SGE there was something like this | if($

[slurm-users] Dependencies problem with cfncluster

2017-12-20 Thread david martin
Hi folks, Not sure i should post this here but thought you may have seen this problem before. I´m running slurm(16.05) together with cfncluster from aws and using autoscaling. It seems to work except for dependencies. I always get an error: _sbatch: error: Batch job submission falied: Jo

[slurm-users] Autoscaling slurm

2017-12-18 Thread david martin
Hi, I´m using slurm together with clustercfn autoscaling. I just have a problem and thought that you may help. When i run a script #Script.sh # /bin/bash ./myprogram --threads=5  inputfile outputfile The program uses 5 threads , assuming only 1 thread per cpu is launched it would requi