[API-users] New Portal/Occurrece API functionalities

[Tim Robertson]

Hi David,

We announce new features such as this on api mailing list.
The next iteration on the search API will likely be in September since we are 
heading into a very busy period of analytic runs while several staff have 
vacations.

Many thanks,
Tim


From: Herbario SANT mailto:sant.herbar...@gmail.com>>
Date: Friday 17 June 2016 at 14:24
To: Tim Robertson mailto:trobertson at gbif.org>>
Cc: godfoder mailto:godfoder at acis.ufl.edu>>, 
"api-users at lists.gbif.org<mailto:api-users at lists.gbif.org>" mailto:api-users at lists.gbif.org>>, informatics mailto:informatics at gbif.org>>
Subject: Re: [API-users] New Portal/Occurrece API functionalities

Great, thanks!

When you say "we'll add this in the next iteration" ... how long does it take?

Or how can I be aware of "new iterations"?

Thanks again
David


On 16 June 2016 at 07:22, Tim Robertson mailto:trobertson at gbif.org>> wrote:
Thanks David,

We'll add that one as well.  We've recently moved all our search infrastructure 
so can start accommodating more fields and offering e.g.. full text and facets.
That was not possible before.

Thanks,
Tim


From: Herbario SANT mailto:sant.herbar...@gmail.com>>
Date: Wednesday 15 June 2016 at 23:51
To: Tim Robertson mailto:trobertson at gbif.org>>
Cc: godfoder mailto:godfoder at acis.ufl.edu>>, 
"api-users at lists.gbif.org<mailto:api-users at lists.gbif.org>" mailto:api-users at lists.gbif.org>>
Subject: Re: [API-users] New Portal/Occurrece API functionalities

Tim, if you offer particular fields to be searchable, there is a pretty old 
request for StateProvince to be used for filtering:

http://dev.gbif.org/issues/browse/POR-991

There are some duplicated issues reporting the same need since year 2009.

This will be very useful for geographical filtering within some countries where 
nearly all provided values for this field are pretty standardized.

Maybe it's time to do it?

Regards,
David


On 15 June 2016 at 22:28, Tim Robertson mailto:trobertson at gbif.org>> wrote:
Hi Alex,

We can add the protocol in the next iteration.  Any other fields you have 
particular interest in?

All the best,
Tim




--
David Garc?a San Le?n
Herbario SANT
Facultade de Farmacia - Laboratorio de Bot?nica
Universidade de Santiago de Compostela
15782 - Galicia (Spain)




--
David Garc?a San Le?n
(dixitalizaci?n / control de fondos)
Herbario SANT
Facultade de Farmacia - Laboratorio de Bot?nica
Universidade de Santiago de Compostela
15782 - Galicia (Spain)
http://www.usc.es/herbario
Tel. +34 881815022
Fax +34 981594912
Skype: herbarium_sant
Twitter: @SANT_Herbarium
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[API-users] New Portal/Occurrece API functionalities

[Tim Robertson]

Thanks David,

We'll add that one as well.  We've recently moved all our search infrastructure 
so can start accommodating more fields and offering e.g.. full text and facets.
That was not possible before.

Thanks,
Tim


From: Herbario SANT mailto:sant.herbar...@gmail.com>>
Date: Wednesday 15 June 2016 at 23:51
To: Tim Robertson mailto:trobertson at gbif.org>>
Cc: godfoder mailto:godfoder at acis.ufl.edu>>, 
"api-users at lists.gbif.org<mailto:api-users at lists.gbif.org>" mailto:api-users at lists.gbif.org>>
Subject: Re: [API-users] New Portal/Occurrece API functionalities

Tim, if you offer particular fields to be searchable, there is a pretty old 
request for StateProvince to be used for filtering:

http://dev.gbif.org/issues/browse/POR-991

There are some duplicated issues reporting the same need since year 2009.

This will be very useful for geographical filtering within some countries where 
nearly all provided values for this field are pretty standardized.

Maybe it's time to do it?

Regards,
David


On 15 June 2016 at 22:28, Tim Robertson mailto:trobertson at gbif.org>> wrote:
Hi Alex,

We can add the protocol in the next iteration.  Any other fields you have 
particular interest in?

All the best,
Tim




--
David Garc?a San Le?n
Herbario SANT
Facultade de Farmacia - Laboratorio de Bot?nica
Universidade de Santiago de Compostela
15782 - Galicia (Spain)

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[API-users] New Portal/Occurrece API functionalities

[Herbario SANT]

Tim, if you offer particular fields to be searchable, there is a pretty old
request for StateProvince to be used for filtering:

http://dev.gbif.org/issues/browse/POR-991

There are some duplicated issues reporting the same need since year 2009.

This will be very useful for geographical filtering within some countries
where nearly all provided values for this field are pretty standardized.

Maybe it's time to do it?

Regards,
David


On 15 June 2016 at 22:28, Tim Robertson  wrote:

> Hi Alex,
>
> We can add the protocol in the next iteration.  Any other fields you have
> particular interest in?
>
> All the best,
> Tim
>
>
>

-- 
David Garc?a San Le?n
Herbario SANT
Facultade de Farmacia - Laboratorio de Bot?nica
Universidade de Santiago de Compostela
15782 - Galicia (Spain)
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[API-users] New Portal/Occurrece API functionalities

[Tim Robertson]

Hi Alex,

We can add the protocol in the next iteration.  Any other fields you have 
particular interest in?

All the best,
Tim


From: API-users mailto:api-users-bounces 
at lists.gbif.org>> on behalf of godfoder mailto:godfo...@acis.ufl.edu>>
Date: Wednesday 15 June 2016 at 22:05
To: "api-users at lists.gbif.org<mailto:api-users at lists.gbif.org>" 
mailto:api-users at lists.gbif.org>>
Subject: Re: [API-users] New Portal/Occurrece API functionalities

Awesome work guys, this make a number of data mining queries I used to have to 
run much easier and accessible right from the API/Download system.

Any chance that the protocol field could be made searchable? Its always 
frustrating when I can see fields in the API, but have no ability to inspect 
their contents other that iteration. It's like the data is locked away just out 
of reach.

- Alex

On 06/15/2016 09:44 AM, Federico Mendez wrote:
Dear GBIFApiers, we are excited to announce some new features that are now 
supported by there GBIF Portal and Occurrence API:

  1.  Full text search is now supported. Some examples of this new function are:
 *   Search by collector (recorded by):
*   
http://api.gbif.org/v1/occurrence/search?q=hobern<http://www.gbif.org/occurrence/search?q=hobern>
*   http://api.gbif.org/v1/occurrence/search?q=desmet
 *   Search by locality shows accurate results for most of the cases: 
http://api.gbif.org/v1/occurrence/search?q=santa%20ana
 *   This service provides suggestions when a 'similar/corrected' version 
of the query could show more accurate results: 
http://api.gbif.org/v1/occurrence/search?q=kajsdkla=true .
 *   This functionality is also supported by the GBIF portal: 
http://www.gbif.org/occurrence/search?q=cobra<http://www.gbif.org/occurrence/search>
  2.  Faceted search
 *   The GBIF portal now supports faceted navigation by:  basis of record, 
type status, data set, country,  year and month. Please, see this example: 
http://www.gbif.org/occurrence/search?basis_of_record=FOSSIL_SPECIMEN .
 *   The GBIF API supports faceted results  by: basisOfRecord, 
catalogNumber, classKey, collectionCode, country, datasetKey, decimalLatitude, 
decimalLongitude, depth, elevation, establishmentMeans, familyKey, genusKey, 
hasCoordinate, hasGeospatialIssue, institutionCode, issue, kingdomKey, 
mediaType, month, occurrenceID, orderKey, phylumKey, publishingCountry, 
recordedBy, recordNumber, repatriated, scientificName, speciesKey, subgenusKey, 
taxonKey, typeStatus and year.
 *   The occurrence API supports pagination request in facets using the 
parameters facetLimit and facetOffset, see this example:
*   First three country counts/facets: 
<http://api.gbif.org/v1/occurrence/search?facet=COUNTRY=3=0=0>
 
http://api.gbif.org/v1/occurrence/search?facet=COUNTRY=3=0=0
*   Next three country counts/facets: 
<http://api.gbif.org/v1/occurrence/search?facet=COUNTRY=3=3=0>
 
http://api.gbif.org/v1/occurrence/search?facet=COUNTRY=3=3=0
  3.  A new repatriation filter allows to search for records whose publishing 
country is different to the country where the record was recorded in. For 
example, the following link shows the repatriated data of Costa 
Rica:http://api.gbif.org/v1/occurrence/search?COUNTRY=CR=true .

Be aware that this is still in a experimental phase and its definition could 
change in the future. Please refer to the API documentation 
http://www.gbif.org/developer/occurrence and don't hesitate to contact us if 
you have further questions!


Best regards, GBIFS Informatics.



___
API-users mailing list
API-users at lists.gbif.org<mailto:API-users at 
lists.gbif.org>http://lists.gbif.org/mailman/listinfo/api-users

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[API-users] New Portal/Occurrece API functionalities

[Peter (work)]

Awesome!

> Op 15 jun. 2016 om 15:44 heeft Federico Mendez  het 
> volgende geschreven:
> 
> Dear GBIFApiers, we are excited to announce some new features that are now 
> supported by there GBIF Portal and Occurrence API:
> Full text search is now supported. Some examples of this new function are:
> Search by collector (recorded by): 
> http://api.gbif.org/v1/occurrence/search?q=hobern 
> http://api.gbif.org/v1/occurrence/search?q=desmet 
> Search by locality shows accurate results for most of the cases: 
> http://api.gbif.org/v1/occurrence/search?q=santa%20ana 
> This service provides suggestions when a ?similar/corrected? version of the 
> query could show more accurate results: 
> http://api.gbif.org/v1/occurrence/search?q=kajsdkla=true .
> This functionality is also supported by the GBIF portal: 
> http://www.gbif.org/occurrence/search?q=cobra
> Faceted search 
> The GBIF portal now supports faceted navigation by:  basis of record, type 
> status, data set, country,  year and month. Please, see this example: 
> http://www.gbif.org/occurrence/search?basis_of_record=FOSSIL_SPECIMEN .
> The GBIF API supports faceted results  by: basisOfRecord, catalogNumber, 
> classKey, collectionCode, country, datasetKey, decimalLatitude, 
> decimalLongitude, depth, elevation, establishmentMeans, familyKey, genusKey, 
> hasCoordinate, hasGeospatialIssue, institutionCode, issue, kingdomKey, 
> mediaType, month, occurrenceID, orderKey, phylumKey, publishingCountry, 
> recordedBy, recordNumber, repatriated, scientificName, speciesKey, 
> subgenusKey, taxonKey, typeStatus and year. 
> The occurrence API supports pagination request in facets using the parameters 
> facetLimit and facetOffset, see this example:
> First three country counts/facets: 
> http://api.gbif.org/v1/occurrence/search?facet=COUNTRY=3=0=0
> Next three country counts/facets: 
> http://api.gbif.org/v1/occurrence/search?facet=COUNTRY=3=3=0
>   
> A new repatriation filter allows to search for records whose publishing 
> country is different to the country where the record was recorded in. For 
> example, the following link shows the repatriated data of Costa 
> Rica:http://api.gbif.org/v1/occurrence/search?COUNTRY=CR=true .
> 
> Be aware that this is still in a experimental phase and its definition could 
> change in the future. Please refer to the API documentation 
> http://www.gbif.org/developer/occurrence and don?t hesitate to contact us if 
> you have further questions!
> 
> 
> Best regards, GBIFS Informatics.
> ___
> API-users mailing list
> API-users at lists.gbif.org
> http://lists.gbif.org/mailman/listinfo/api-users
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[API-users] New Portal/Occurrece API functionalities

[godfoder]

Perhaps I spoke too soon about the download system, it looks like the 
repatriation flag might not be available there yet? (At least, when i 
tried to download a dataset, it returned 0 records.)

- Alex

On 06/15/2016 04:05 PM, godfoder wrote:
> Awesome work guys, this make a number of data mining queries I used to 
> have to run much easier and accessible right from the API/Download system.
>
> Any chance that the protocol field could be made searchable? Its 
> always frustrating when I can see fields in the API, but have no 
> ability to inspect their contents other that iteration. It's like the 
> data is locked away just out of reach.
>
> - Alex
>
> On 06/15/2016 09:44 AM, Federico Mendez wrote:
>>
>> Dear GBIFApiers, we are excited to announce some new features that 
>> are now supported by there GBIF Portal and Occurrence API:
>>
>>  1. Full text search is now supported. Some examples of this new
>> function are:
>>   * Search by collector (recorded by):
>>   o http://api.gbif.org/v1/occurrence/search?q=hobern
>> 
>>   o http://api.gbif.org/v1/occurrence/search?q=desmet
>>   * Search by locality shows accurate results for most of the
>> cases: http://api.gbif.org/v1/occurrence/search?q=santa%20ana
>> 
>>   * This service provides suggestions when a ?similar/corrected?
>> version of the query could show more accurate results:
>> http://api.gbif.org/v1/occurrence/search?q=kajsdkla=true .
>>   * This functionality is also supported by the GBIF portal:
>> http://www.gbif.org/occurrence/search?q=cobra
>> 
>>  2. Faceted search
>>  1. The GBIF portal now supports faceted navigation by: /basis of
>> record, type status, data set, country,  year /and/ month/.
>> Please, see this example:
>> 
>> http://www.gbif.org/occurrence/search?basis_of_record=FOSSIL_SPECIMEN .
>>  2. The GBIF API supports faceted results  by: /basisOfRecord,
>> catalogNumber, classKey, collectionCode, country, datasetKey,
>> decimalLatitude, decimalLongitude, depth, elevation,
>> establishmentMeans, familyKey, genusKey, hasCoordinate,
>> hasGeospatialIssue, institutionCode, issue, kingdomKey,
>> mediaType, month, occurrenceID, orderKey, phylumKey,
>> publishingCountry, recordedBy, recordNumber, repatriated,
>> scientificName, speciesKey, subgenusKey, taxonKey, typeStatus
>> /and/ year. /
>>  3. The occurrence API supports pagination request in facets
>> using the parameters /facetLimit/ and /facetOffset/, see this
>> example:
>>  1. First three country counts/facets:
>> 
>> http://api.gbif.org/v1/occurrence/search?facet=COUNTRY=3=0=0
>>  2. Next three country counts/facets:
>> 
>> http://api.gbif.org/v1/occurrence/search?facet=COUNTRY=3=3=0
>>
>>  3. A new repatriation filter allows to search for records whose
>> publishing country is different to the country where the record
>> was recorded in. For example, the following link shows the
>> repatriated data of Costa
>> Rica:http://api.gbif.org/v1/occurrence/search?COUNTRY=CR=true
>> .
>>
>>
>> Be aware that this is/ still in a experimental phase and its 
>> definition could change in the future. /Please refer to the API 
>> documentation http://www.gbif.org/developer/occurrence and don?t 
>> hesitate to contact us if you have further questions!
>>
>>
>> Best regards, GBIFS Informatics.
>>
>>
>>
>> ___
>> API-users mailing list
>> API-users at lists.gbif.org
>> http://lists.gbif.org/mailman/listinfo/api-users
>

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[API-users] New Portal/Occurrece API functionalities

[godfoder]

Awesome work guys, this make a number of data mining queries I used to 
have to run much easier and accessible right from the API/Download system.

Any chance that the protocol field could be made searchable? Its always 
frustrating when I can see fields in the API, but have no ability to 
inspect their contents other that iteration. It's like the data is 
locked away just out of reach.

- Alex

On 06/15/2016 09:44 AM, Federico Mendez wrote:
>
> Dear GBIFApiers, we are excited to announce some new features that are 
> now supported by there GBIF Portal and Occurrence API:
>
>  1. Full text search is now supported. Some examples of this new
> function are:
>   * Search by collector (recorded by):
>   o http://api.gbif.org/v1/occurrence/search?q=hobern
> 
>   o http://api.gbif.org/v1/occurrence/search?q=desmet
>   * Search by locality shows accurate results for most of the
> cases: http://api.gbif.org/v1/occurrence/search?q=santa%20ana
> 
>   * This service provides suggestions when a ?similar/corrected?
> version of the query could show more accurate results:
> http://api.gbif.org/v1/occurrence/search?q=kajsdkla=true .
>   * This functionality is also supported by the GBIF portal:
> http://www.gbif.org/occurrence/search?q=cobra
> 
>  2. Faceted search
>  1. The GBIF portal now supports faceted navigation by: /basis of
> record, type status, data set, country,  year /and/ month/.
> Please, see this example:
> http://www.gbif.org/occurrence/search?basis_of_record=FOSSIL_SPECIMEN 
> .
>  2. The GBIF API supports faceted results  by: /basisOfRecord,
> catalogNumber, classKey, collectionCode, country, datasetKey,
> decimalLatitude, decimalLongitude, depth, elevation,
> establishmentMeans, familyKey, genusKey, hasCoordinate,
> hasGeospatialIssue, institutionCode, issue, kingdomKey,
> mediaType, month, occurrenceID, orderKey, phylumKey,
> publishingCountry, recordedBy, recordNumber, repatriated,
> scientificName, speciesKey, subgenusKey, taxonKey, typeStatus
> /and/ year. /
>  3. The occurrence API supports pagination request in facets using
> the parameters /facetLimit/ and /facetOffset/, see this example:
>  1. First three country counts/facets:
> 
> http://api.gbif.org/v1/occurrence/search?facet=COUNTRY=3=0=0
>  2. Next three country counts/facets:
> 
> http://api.gbif.org/v1/occurrence/search?facet=COUNTRY=3=3=0
>
>  3. A new repatriation filter allows to search for records whose
> publishing country is different to the country where the record
> was recorded in. For example, the following link shows the
> repatriated data of Costa
> Rica:http://api.gbif.org/v1/occurrence/search?COUNTRY=CR=true
> .
>
>
> Be aware that this is/ still in a experimental phase and its 
> definition could change in the future. /Please refer to the API 
> documentation http://www.gbif.org/developer/occurrence and don?t 
> hesitate to contact us if you have further questions!
>
>
> Best regards, GBIFS Informatics.
>
>
>
> ___
> API-users mailing list
> API-users at lists.gbif.org
> http://lists.gbif.org/mailman/listinfo/api-users

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[API-users] New Portal/Occurrece API functionalities

[Federico Mendez]

Dear GBIFApiers, we are excited to announce some new features that are now 
supported by there GBIF Portal and Occurrence API:

  1.  Full text search is now supported. Some examples of this new function are:
 *   Search by collector (recorded by):
*   
http://api.gbif.org/v1/occurrence/search?q=hobern
*   http://api.gbif.org/v1/occurrence/search?q=desmet
 *   Search by locality shows accurate results for most of the cases: 
http://api.gbif.org/v1/occurrence/search?q=santa%20ana
 *   This service provides suggestions when a 'similar/corrected' version 
of the query could show more accurate results: 
http://api.gbif.org/v1/occurrence/search?q=kajsdkla=true .
 *   This functionality is also supported by the GBIF portal: 
http://www.gbif.org/occurrence/search?q=cobra
  2.  Faceted search
 *   The GBIF portal now supports faceted navigation by:  basis of record, 
type status, data set, country,  year and month. Please, see this example: 
http://www.gbif.org/occurrence/search?basis_of_record=FOSSIL_SPECIMEN .
 *   The GBIF API supports faceted results  by: basisOfRecord, 
catalogNumber, classKey, collectionCode, country, datasetKey, decimalLatitude, 
decimalLongitude, depth, elevation, establishmentMeans, familyKey, genusKey, 
hasCoordinate, hasGeospatialIssue, institutionCode, issue, kingdomKey, 
mediaType, month, occurrenceID, orderKey, phylumKey, publishingCountry, 
recordedBy, recordNumber, repatriated, scientificName, speciesKey, subgenusKey, 
taxonKey, typeStatus and year.
 *   The occurrence API supports pagination request in facets using the 
parameters facetLimit and facetOffset, see this example:
*   First three country counts/facets: 
http://api.gbif.org/v1/occurrence/search?facet=COUNTRY=3=0=0
*   Next three country counts/facets: 
http://api.gbif.org/v1/occurrence/search?facet=COUNTRY=3=3=0
  3.  A new repatriation filter allows to search for records whose publishing 
country is different to the country where the record was recorded in. For 
example, the following link shows the repatriated data of Costa 
Rica:http://api.gbif.org/v1/occurrence/search?COUNTRY=CR=true .

Be aware that this is still in a experimental phase and its definition could 
change in the future. Please refer to the API documentation 
http://www.gbif.org/developer/occurrence and don't hesitate to contact us if 
you have further questions!


Best regards, GBIFS Informatics.
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[API-users] New Portal/Occurrece API functionalities

[Daniel Amariles]

Brilliant!
El jun 15, 2016 10:26 AM, "Peter (work)" 
escribi?:

> Awesome!
>
> Op 15 jun. 2016 om 15:44 heeft Federico Mendez  het
> volgende geschreven:
>
> Dear GBIFApiers, we are excited to announce some new features that are
> now supported by there GBIF Portal and Occurrence API:
>
>1. Full text search is now supported. Some examples of this new
>function are:
>   - Search by collector (recorded by):
>  - http://api.gbif.org/v1/occurrence/search?q=hobern
>  
>  - http://api.gbif.org/v1/occurrence/search?q=desmet
>   - Search by locality shows accurate results for most of the cases:
>   http://api.gbif.org/v1/occurrence/search?q=santa%20ana
>   - This service provides suggestions when a ?similar/corrected?
>   version of the query could show more accurate results:
>   http://api.gbif.org/v1/occurrence/search?q=kajsdkla=true
>.
>   - This functionality is also supported by the GBIF portal:
>   http://www.gbif.org/occurrence/search?q=cobra
>   
>2. Faceted search
>   1. The GBIF portal now supports faceted navigation by:  *basis of
>   record, type status, data set, country,  year *and* month*. Please,
>   see this example:
>   http://www.gbif.org/occurrence/search?basis_of_record=FOSSIL_SPECIMEN
>.
>   2. The GBIF API supports faceted results  by: *basisOfRecord,
>   catalogNumber, classKey, collectionCode, country, datasetKey,
>   decimalLatitude, decimalLongitude, depth, elevation, establishmentMeans,
>   familyKey, genusKey, hasCoordinate, hasGeospatialIssue, institutionCode,
>   issue, kingdomKey, mediaType, month, occurrenceID, orderKey, phylumKey,
>   publishingCountry, recordedBy, recordNumber, repatriated, 
> scientificName,
>   speciesKey, subgenusKey, taxonKey, typeStatus *and* year. *
>   3. The occurrence API supports pagination request in facets using
>   the parameters *facetLimit* and *facetOffset*, see this example:
>  1. First three country counts/facets:
>  
> http://api.gbif.org/v1/occurrence/search?facet=COUNTRY=3=0=0
>  2. Next three country counts/facets:
>  
> http://api.gbif.org/v1/occurrence/search?facet=COUNTRY=3=3=0
>
>   3. A new repatriation filter allows to search for records whose
>publishing country is different to the country where the record was
>recorded in. For example, the following link shows the repatriated data of
>Costa Rica:
>http://api.gbif.org/v1/occurrence/search?COUNTRY=CR=true .
>
>
> Be aware that this is* still in a experimental phase and its definition
> could change in the future. *Please refer to the API documentation
> http://www.gbif.org/developer/occurrence and don?t hesitate to contact us
> if you have further questions!
>
>
> Best regards, GBIFS Informatics.
>
> ___
> API-users mailing list
> API-users at lists.gbif.org
> http://lists.gbif.org/mailman/listinfo/api-users
>
>
> ___
> API-users mailing list
> API-users at lists.gbif.org
> http://lists.gbif.org/mailman/listinfo/api-users
>
>
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