[Artemis-users] Customized Genbank file - differentially color genes?

2010-05-23 Thread Shahar .
Hello,

I wrote a customized genbank file with my genes of interest with notes etc.
I wonder if it's possible to control the display color for different genes.
I have a few different groups of genes, and it would be wonderful if I could
make them visually distinguishable, e.g., by setting the display color for
each gene in the genbank file.

Thank you,
Shahar
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Re: [Artemis-users] Customized Genbank file - differentially color genes?

2010-05-23 Thread Yealing
Hi Shahar,

You can use a /color or /colour tag (called a feature in artemis) in the
genbank file. you can add it in using a script or by using artemis itself:
Edit  Qualifier of Selected Feature(s)  Change
In the pop-up box, just type /colour=1 and click Add to make the selected
features grey.

Here's a link to a tutorial, section V lists a few examples of the qualifier
to colour feature in RGB values.
http://pseudomonas-syringae.org/artemis_tutorial.htm#V
There are also about 19 preset colours in artemis that you can use. You can
get a list of what colour number 1-19 is preset to in the artemis manual.

All the best,
-- yealing --


On Mon, May 24, 2010 at 2:44 AM, Shahar . shahar...@gmail.com wrote:

 Hello,

 I wrote a customized genbank file with my genes of interest with notes etc.
 I wonder if it's possible to control the display color for different genes.

 I have a few different groups of genes, and it would be wonderful if I
 could make them visually distinguishable, e.g., by setting the display color
 for each gene in the genbank file.

 Thank you,
 Shahar

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 Artemis-users mailing list
 Artemis-users@sanger.ac.uk
 http://lists.sanger.ac.uk/mailman/listinfo/artemis-users

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