Re: [Artemis-users] colour qualifier
Hi Stephanie There are two sections in the Artemis manual that are worth looking at in connection with this 'Feature Colours' and 'Setting Colours' (chapter 5). So there are 18 default colours but you can add your own. Regards Tim On 7/20/10 10:17 AM, "Stefanie Lager" wrote: > Hi, > > I understand that I can use a colour qualifier (like: FT > /colour=1) in Artemis, but how many different colours can I > use/separate in that way? > > Regards, > > Stefanie > > ___ > Artemis-users mailing list > Artemis-users@sanger.ac.uk > http://lists.sanger.ac.uk/mailman/listinfo/artemis-users ___ Artemis-users mailing list Artemis-users@sanger.ac.uk http://lists.sanger.ac.uk/mailman/listinfo/artemis-users
[Artemis-users] colour qualifier
Hi, I understand that I can use a colour qualifier (like: FT /colour=1) in Artemis, but how many different colours can I use/separate in that way? Regards, Stefanie ___ Artemis-users mailing list Artemis-users@sanger.ac.uk http://lists.sanger.ac.uk/mailman/listinfo/artemis-users
Re: [Artemis-users] Searching for a qualifier?
Hi Lionel You can use the feature selector to locate the pseudogenes. From the 'Select' menu open the 'Feature Selector'. Select the Key and Qualifier (CDS and pseudo) to search for and click the 'View' button. This will list those features with that qualifier in a separate window. You can use that list to select the features and the up and down arrows, on the keyboard, to move the feature display in the Artemis window to each in turn. For ACT, if you want to use shortcuts (other than edit selected feature) on any of the sequences you need to use the 'ALT' key with the shortcut, e.g. ALT+T to trim to any met. Regards Tim On 7/20/10 8:22 AM, "Lionel Guy" wrote: > Hi all, > > Is there a way to search for the presence of a certain qualifier in > artemis? For example, I have pseudogenes in the genome I'm analyzing, > and they are tagged in gene features with the qualifier /pseudo > (without a value). Is there a way to list them/navigate between them? > > Another unrelated question: in ACT, is there a way to use keyboard > shortcuts (edit, view features, bring the navigator, for example) on > another "line" (i.e. genome) than the first one? I use to have my > genome of interest in the middle, to better see the differences with > other genomes, but it's a bit annoying not to be able to directly > access genes in the one I'm interested in. > > Any help appreciated! > > Regards, > > Lionel > > ___ > Artemis-users mailing list > Artemis-users@sanger.ac.uk > http://lists.sanger.ac.uk/mailman/listinfo/artemis-users ___ Artemis-users mailing list Artemis-users@sanger.ac.uk http://lists.sanger.ac.uk/mailman/listinfo/artemis-users
[Artemis-users] Searching for a qualifier?
Hi all, Is there a way to search for the presence of a certain qualifier in artemis? For example, I have pseudogenes in the genome I'm analyzing, and they are tagged in gene features with the qualifier /pseudo (without a value). Is there a way to list them/navigate between them? Another unrelated question: in ACT, is there a way to use keyboard shortcuts (edit, view features, bring the navigator, for example) on another "line" (i.e. genome) than the first one? I use to have my genome of interest in the middle, to better see the differences with other genomes, but it's a bit annoying not to be able to directly access genes in the one I'm interested in. Any help appreciated! Regards, Lionel ___ Artemis-users mailing list Artemis-users@sanger.ac.uk http://lists.sanger.ac.uk/mailman/listinfo/artemis-users
