Re: [Artemis-users] opening a gff file - log4j issue

2008-11-19 Thread Tim Carver
Hi Gareth

Those are warnings that can be safely ignored.
Have you tried increasing the maximum memory it can use? Look for the line
beginning 'MEM=' in the art run script. Are there any message written to the
terminal window?

Regards
Tim


On 19/11/08 17:11, Gareth Bloomfield [EMAIL PROTECTED] wrote:

 Hi,
 
 I'm trying to open some gff files using release 10 (in linux), and getting
 the messages...
 
 log4j:WARN No appenders could be found for logger
 (uk.ac.sanger.artemis.io.GFFStreamFeature).
 log4j:WARN Please initialize the log4j system properly.
 
 ... then it hangs. I don't have anything about
 uk.ac.sanger.artemis.io.GFFStreamFeature in my
 artemis/etc/log4j.properties file - should I?
 
 Any hints would be very gratefully received.
 Thanks,
 
 Gareth
 
 
 
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 Artemis-users@sanger.ac.uk
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Re: [Artemis-users] opening a gff file - log4j issue

2008-11-19 Thread Tim Carver

Alternatively this may be a problem with it producing an extremely long
dialog (if there are qualifiers/keys it doesn't recognise) that you cannot
click away. This is a problem that is fixed in the development version that
you can get from:

http://www.sanger.ac.uk/Software/Artemis/#development

Tim


On 19/11/08 17:17, Tim Carver [EMAIL PROTECTED] wrote:

 Hi Gareth
 
 Those are warnings that can be safely ignored.
 Have you tried increasing the maximum memory it can use? Look for the line
 beginning 'MEM=' in the art run script. Are there any message written to the
 terminal window?
 
 Regards
 Tim
 
 
 On 19/11/08 17:11, Gareth Bloomfield [EMAIL PROTECTED] wrote:
 
 Hi,
 
 I'm trying to open some gff files using release 10 (in linux), and getting
 the messages...
 
 log4j:WARN No appenders could be found for logger
 (uk.ac.sanger.artemis.io.GFFStreamFeature).
 log4j:WARN Please initialize the log4j system properly.
 
 ... then it hangs. I don't have anything about
 uk.ac.sanger.artemis.io.GFFStreamFeature in my
 artemis/etc/log4j.properties file - should I?
 
 Any hints would be very gratefully received.
 Thanks,
 
 Gareth
 
 
 
 ___
 Artemis-users mailing list
 Artemis-users@sanger.ac.uk
 http://lists.sanger.ac.uk/mailman/listinfo/artemis-users
 
 
 
 ___
 Artemis-users mailing list
 Artemis-users@sanger.ac.uk
 http://lists.sanger.ac.uk/mailman/listinfo/artemis-users



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Artemis-users@sanger.ac.uk
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