Re: [Avogadro-Discuss] AutoOptimization

2016-10-22 Thread Michael Morgan
Dear Patrick,

 

Thank you for your kind help! The problem is solved with your help.

 

1)  If I run Avogadro.exe from the \bin folder, then open files, I can use 
the force fields.

2)  If I created a shortcut link in the desktop and run it, I can use the 
force fields.

3)  I have assigned “C:\Program Files (x86)\Avogadro\bin\avogadro.exe” to 
open the Gaussian output files by default. If I open an output 
file using Avogadro by directly clicking the file, I cannot use the force 
fields. Not sure what is wrong.

 

Cheers,

Michael

 

From: Patrick Avery [mailto:psav...@buffalo.edu] 
Sent: Saturday, October 22, 2016 9:35 AM
To: avogadro-discuss@lists.sourceforge.net
Subject: Re: [Avogadro-Discuss] AutoOptimization

 

Hi Michael,

 

This usually means the force field files were not found. These are the files at 
this location: https://github.com/openbabel/openbabel/tree/master/data

 

I can think of two likely scenarios. Either

 

1: you don't have the files. Check your install location (probably C:\Program 
Files (x86)\Avogadro). Open the bin folder and see if the force field files are 
there.

 

2: if you do have the files, the force field files may not be loading if 
Avogadro's runtime location is not in C:\Program Files (x86)\Avogadro\bin. You 
can double click the Avogadro executable in C:\Program Files (x86)\Avogadro\bin 

And the force fields should work then. If you are using a shortcut, right click 
it and select "properties" and make sure it says it is starting in C:\Program 
Files (x86)\Avogadro\bin and not C:\Program Files (x86)\Avogadro.

 

I tried setting it up to make sure we wouldn't run into either of those 
problems. Perhaps I missed something, though. Did you create your own shortcut?

 

Thanks,

Patrick 


On Friday, October 21, 2016, Michael Morgan <michaelmorgan...@gmail.com> wrote:

Dear All,

 

My Avogadro’s AutoOptimization stopped working. When I clicked “Start”, it 
showed “AutoOpt: Could not setup force field…”. I have tried most simple 
molecules, as well as choosing different force field. All the same. Any idea 
what is wrong?

 

My Avogadro version is most recent one (1.2.0). Windows 10.

 

Thank you very much.

 

Best

Michael

 

 

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[Avogadro-Discuss] (no subject)

2016-03-02 Thread Michael Morgan
Dear Avogadro users,

 

If I build a molecule from "File" > "Import" > "Fetch by chemical name.",
how exactly is the molecule built? How much can I trust  
the bond angle or bond length building this way?

 

Thank you very much.

 

Best regards,

Michael

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