Re: [base] Error on Biomaterials LIMS

2012-11-22 Thread Paulo Nuin
It works fine now, thanks for the help. I guess I missed that spot on the 
second install I performed.

Thanks a lot

Paulo


On 2012-11-22, at 2:19 PM, Nicklas Nordborg  wrote:

> On 2012-11-22 19:40, Paulo Nuin wrote:
>> Hi
>> 
>> We have a couple of instances of BASE installed in our systems. We are
>> getting a problem whenever we are accessing entities created in the
>> Biomaterial LIMS, either samples or biosources:
> 
> This is a Tomcat configuration problem and is described in the 
> installation documentation:
> 
> http://base.thep.lu.se/chrome/site/latest/html/admin/installation.main.html
> 
> Check the section about STRICT_QUOTE_ESCAPING and make sure that this is 
> set to 'false'.
> 
> Hope this helps.
> 
> /Nicklas
> 
> --
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Re: [base] Error on Biomaterials LIMS

2012-11-22 Thread Nicklas Nordborg
On 2012-11-22 19:40, Paulo Nuin wrote:
> Hi
>
> We have a couple of instances of BASE installed in our systems. We are
> getting a problem whenever we are accessing entities created in the
> Biomaterial LIMS, either samples or biosources:

This is a Tomcat configuration problem and is described in the 
installation documentation:

http://base.thep.lu.se/chrome/site/latest/html/admin/installation.main.html

Check the section about STRICT_QUOTE_ESCAPING and make sure that this is 
set to 'false'.

Hope this helps.

/Nicklas

--
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web console. Get in-depth insight into apps, servers, databases, vmware,
SAP, cloud infrastructure, etc. Download 30-day Free Trial.
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[base] Error on Biomaterials LIMS

2012-11-22 Thread Paulo Nuin
Hi

We have a couple of instances of BASE installed in our systems. We are getting 
a problem whenever we are accessing entities created in the Biomaterial LIMS, 
either samples or biosources:

type Exception report

message

description The server encountered an internal error () that prevented it from 
fulfilling this request.

exception

org.apache.jasper.JasperException: 
/biomaterials/samples/view_sample.jsp(191,28) Attribute value 
"index.jsp?ID="+ID is quoted with " which must be escaped when used within the 
value

org.apache.jasper.compiler.DefaultErrorHandler.jspError(DefaultErrorHandler.java:40)

org.apache.jasper.compiler.ErrorDispatcher.dispatch(ErrorDispatcher.java:407)

org.apache.jasper.compiler.ErrorDispatcher.jspError(ErrorDispatcher.java:88)
org.apache.jasper.compiler.Parser.parseAttributeValue(Parser.java:256)
org.apache.jasper.compiler.Parser.parseAttribute(Parser.java:205)
org.apache.jasper.compiler.Parser.parseAttributes(Parser.java:148)
org.apache.jasper.compiler.Parser.parseCustomTag(Parser.java:1208)
org.apache.jasper.compiler.Parser.parseElements(Parser.java:1422)
org.apache.jasper.compiler.Parser.parseBody(Parser.java:1634)
org.apache.jasper.compiler.Parser.parseOptionalBody(Parser.java:978)
org.apache.jasper.compiler.Parser.parseCustomTag(Parser.java:1246)
org.apache.jasper.compiler.Parser.parseElements(Parser.java:1422)
org.apache.jasper.compiler.Parser.parseBody(Parser.java:1634)
org.apache.jasper.compiler.Parser.parseOptionalBody(Parser.java:978)
org.apache.jasper.compiler.Parser.parseCustomTag(Parser.java:1246)
org.apache.jasper.compiler.Parser.parseElements(Parser.java:1422)
org.apache.jasper.compiler.Parser.parseBody(Parser.java:1634)
org.apache.jasper.compiler.Parser.parseOptionalBody(Parser.java:978)
org.apache.jasper.compiler.Parser.parseCustomTag(Parser.java:1246)
org.apache.jasper.compiler.Parser.parseElements(Parser.java:1422)
org.apache.jasper.compiler.Parser.parse(Parser.java:130)

org.apache.jasper.compiler.ParserController.doParse(ParserController.java:255)

org.apache.jasper.compiler.ParserController.parse(ParserController.java:103)
org.apache.jasper.compiler.Compiler.generateJava(Compiler.java:185)
org.apache.jasper.compiler.Compiler.compile(Compiler.java:354)
org.apache.jasper.compiler.Compiler.compile(Compiler.java:334)
org.apache.jasper.compiler.Compiler.compile(Compiler.java:321)

org.apache.jasper.JspCompilationContext.compile(JspCompilationContext.java:592)

org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:328)
org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:313)
org.apache.jasper.servlet.JspServlet.service(JspServlet.java:260)
javax.servlet.http.HttpServlet.service(HttpServlet.java:717)

org.apache.jasper.runtime.PageContextImpl.doForward(PageContextImpl.java:709)

org.apache.jasper.runtime.PageContextImpl.forward(PageContextImpl.java:680)

org.apache.jsp.biomaterials.samples.index_jsp._jspService(index_jsp.java:522)
org.apache.jasper.runtime.HttpJspBase.service(HttpJspBase.java:70)
javax.servlet.http.HttpServlet.service(HttpServlet.java:717)

org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:388)
org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:313)
org.apache.jasper.servlet.JspServlet.service(JspServlet.java:260)
javax.servlet.http.HttpServlet.service(HttpServlet.java:717)

net.sf.basedb.clients.web.servlet.CharacterEncodingFilter.doFilter(CharacterEncodingFilter.java:69)

note The full stack trace of the root cause is available in the Apache 
Tomcat/6.0.33 logs.



Any help is appreciated.

Thanks
Paulo--
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