[base] BASE 3.2.3 has been released

2013-09-09 Thread Nicklas Nordborg
Hello all,

We have released BASE 3.2.3 today. This is a bugfix release that
fixes a few minor problems.

For a complete list of changes, see:
http://base.thep.lu.se/query?milestone=BASE+3.2.3group=type

Installation/upgrade instructions:
http://base.thep.lu.se/chrome/site/latest/html/admin/installation.html

As usual, the program can be downloaded from:
http://base.thep.lu.se/wiki/DownloadPage

/Nicklas

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[base] Base 3.2 installation on Mac OS 10.6 server

2013-09-09 Thread Laurent Troxler
Hello  all,
Ì am new at Base and trying to install it on a Mac OS 10.6 server.
Looking in the mailing list archives did not bring me any helping information, 
Mac OS does not appear often. 
Therefore I submit you my problem.
After downloading and unpacking Base, setting Apache, MySQL, TomCat, and 
configuring Base I reached the step of the database initialization with the 
instruction :
./initdb.sh [base_root_login] base_root_password
Below is what I get in return on my terminal. I am using the Base root login 
and password defined in MySQL but it looks like it is not recognized. 
Is there anyone having faced such problem in similar configuration or having 
suggestion
Thank in advance for your help
Laurent


[0%]--System information-
BASE : 3.2.2(build 6266)
Database : 
jdbc:mysql://localhost/base2?characterEncoding=UTF-8useCursorFetch=truedefaultFetchSize=100useServerPrepStmts=true
Dialect  : org.hibernate.dialect.MySQL5InnoDBDialect
JDBC : com.mysql.jdbc.Driver; version 5.1
Java : Java(TM) SE Runtime Environment; 1.6.0_51-b11-457-10M4509; Apple Inc.
OS   : Mac OS X; x86_64; 10.6.8
-15:18:17,129  WARN 
ThreadPoolAsynchronousRunner:608 - 
com.mchange.v2.async.ThreadPoolAsynchronousRunner$DeadlockDetector@7578a7d9 -- 
APPARENT DEADLOCK!!! Creating emergency threads for unassigned pending tasks!
15:18:17,134  WARN ThreadPoolAsynchronousRunner:624 - 
com.mchange.v2.async.ThreadPoolAsynchronousRunner$DeadlockDetector@7578a7d9 -- 
APPARENT DEADLOCK!!! Complete Status: 
Managed Threads: 3
Active Threads: 3
Active Tasks: 

com.mchange.v2.resourcepool.BasicResourcePool$AcquireTask@6dabbec4 
(com.mchange.v2.async.ThreadPoolAsynchronousRunner$PoolThread-#1)

com.mchange.v2.resourcepool.BasicResourcePool$AcquireTask@26796e1c 
(com.mchange.v2.async.ThreadPoolAsynchronousRunner$PoolThread-#0)

com.mchange.v2.resourcepool.BasicResourcePool$AcquireTask@6e2c03ff 
(com.mchange.v2.async.ThreadPoolAsynchronousRunner$PoolThread-#2)
Pending Tasks: 

com.mchange.v2.resourcepool.BasicResourcePool$AcquireTask@bba92db
Pool thread stack traces:

Thread[com.mchange.v2.async.ThreadPoolAsynchronousRunner$PoolThread-#1,5,main]
java.lang.Thread.sleep(Native Method)

com.mchange.v2.resourcepool.BasicResourcePool$AcquireTask.run(BasicResourcePool.java:1805)

com.mchange.v2.async.ThreadPoolAsynchronousRunner$PoolThread.run(ThreadPoolAsynchronousRunner.java:547)

Thread[com.mchange.v2.async.ThreadPoolAsynchronousRunner$PoolThread-#0,5,main]
java.lang.Thread.sleep(Native Method)

com.mchange.v2.resourcepool.BasicResourcePool$AcquireTask.run(BasicResourcePool.java:1805)

com.mchange.v2.async.ThreadPoolAsynchronousRunner$PoolThread.run(ThreadPoolAsynchronousRunner.java:547)

Thread[com.mchange.v2.async.ThreadPoolAsynchronousRunner$PoolThread-#2,5,main]
java.lang.Thread.sleep(Native Method)

com.mchange.v2.resourcepool.BasicResourcePool$AcquireTask.run(BasicResourcePool.java:1805)

com.mchange.v2.async.ThreadPoolAsynchronousRunner$PoolThread.run(ThreadPoolAsynchronousRunner.java:547)


15:18:26,686  WARN BasicResourcePool:1841 - 
com.mchange.v2.resourcepool.BasicResourcePool$AcquireTask@6dabbec4 -- 
Acquisition Attempt Failed!!! Clearing pending acquires. While trying to 
acquire a needed new resource, we failed to succeed more than the maximum 
number of allowed acquisition attempts (30). Last acquisition attempt 
exception: 
java.sql.SQLException: Access denied for user 'base2user'@'localhost' (using 
password: YES)
at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:1078)
at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:4190)
at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:4122)
at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:927)
at com.mysql.jdbc.MysqlIO.secureAuth411(MysqlIO.java:4689)
at com.mysql.jdbc.MysqlIO.doHandshake(MysqlIO.java:1304)
at com.mysql.jdbc.ConnectionImpl.coreConnect(ConnectionImpl.java:2486)
at 
com.mysql.jdbc.ConnectionImpl.connectOneTryOnly(ConnectionImpl.java:2519)
at com.mysql.jdbc.ConnectionImpl.createNewIO(ConnectionImpl.java:2304)
at com.mysql.jdbc.ConnectionImpl.init(ConnectionImpl.java:834)
at com.mysql.jdbc.JDBC4Connection.init(JDBC4Connection.java:47)
at sun.reflect.GeneratedConstructorAccessor11.newInstance(Unknown 
Source)
at 
sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
at com.mysql.jdbc.Util.handleNewInstance(Util.java:411)
at