[base] error during batch import of raw bioassays -- BASE 2.8.4

2008-11-19 Thread Micha Bayer
Howdy again,

I am trying out the new batch importers, and so far I have been
impressed. But now I am stuck on the raw bioassays and I can't get the
import to complete there. I have got it configured and the job starts
running but then fails with this error:

Invalid use of null. The 'rawDataType must be specified for
platform: Generic' value cannot be set to null. on line 2: Pa expI (12h)
1.s...

Any clues?

My data has a column called Platform containing the value Generic
for all rows and another column called Raw data type which contains
the value Agilent for all rows. Have I got this wrong?

Cheers
Micha

==
Dr Micha M Bayer
Bioinformatics Specialist
Genetics Programme
The Scottish Crop Research Institute
Invergowrie
Dundee
DD2 5DA
Scotland, UK
Telephone +44(0)1382 562731 ext. 2309
Fax +44(0)1382 562426
http://www.scri.ac.uk/staff/michabayer
==
 


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Re: [base] error during batch import of raw bioassays -- BASE 2.8.4

2008-11-19 Thread Nicklas Nordborg
Micha Bayer wrote:
 Howdy again,
 
 I am trying out the new batch importers, and so far I have been
 impressed. But now I am stuck on the raw bioassays and I can't get the
 import to complete there. I have got it configured and the job starts
 running but then fails with this error:
 
   Invalid use of null. The 'rawDataType must be specified for
 platform: Generic' value cannot be set to null. on line 2: Pa expI (12h)
 1.s...
 
 Any clues?
 
 My data has a column called Platform containing the value Generic
 for all rows and another column called Raw data type which contains
 the value Agilent for all rows. Have I got this wrong?

The raw data types are looked up by the value of the 'id' attribute for 
the raw-data-type tags in the raw-data-types.xml. In most cases this 
value is the same as the 'name' attribute but has lower-case letters. 
For Agilent you should use 'agilent' instead.

/Nicklas

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