Have same issue, using "--no-colons" solved it partially, some of the 
pages/links are not being generated/not working.

Here is log with errors:
K:\at\office>bean-bake --no-colons at.beancount test
Bottle v0.12.13 server starting up (using WSGIRefServer())...
Listening on http://localhost:9475/
Hit Ctrl-C to quit.

INFO    : Reloading...
127.0.0.1 - - [19/Nov/2018 21:45:19] "GET / HTTP/1.1" 303 0
ERROR   : Redirected: / -> /index
127.0.0.1 - - [19/Nov/2018 21:45:20] "GET /index HTTP/1.1" 200 5459
INFO    : Operation: 'clamp'                                          Time: 
     3 ms
INFO    : Operation: 'realize_opening'                                Time: 
     0 ms
INFO    : Operation: 'realize'                                        Time: 
     3 ms
INFO    : Operation: 'realize_closing'                                Time: 
     2 ms
127.0.0.1 - - [19/Nov/2018 21:45:21] "GET /view/year/2017/balsheet HTTP/1.1" 
200 5464
127.0.0.1 - - [19/Nov/2018 21:45:22] "GET 
/view/year/2017/journal/Equity__Opening-Balances HTTP/1.1" 200 7765
127.0.0.1 - - [19/Nov/2018 21:45:23] "GET 
/view/year/2017/journal/Equity__Earnings__Current HTTP/1.1" 200 29585
....
127.0.0.1 - - [19/Nov/2018 21:46:03] "GET /view/year/2017/conversions 
HTTP/1.1" 200 2139
127.0.0.1 - - [19/Nov/2018 21:46:04] "GET /view/year/2017/openbal HTTP/1.1" 
200 3768
127.0.0.1 - - [19/Nov/2018 21:46:05] "GET /view/year/2017/journal/all 
HTTP/1.1" 303 0
ERROR   : Redirected: /view/year/2017/journal/all -> /view/year/2017/journal
/
127.0.0.1 - - [19/Nov/2018 21:46:06] "GET /view/year/2017/journal/ HTTP/1.1" 
200 330073
127.0.0.1 - - [19/Nov/2018 21:46:08] "GET 
/view/year/2017/journal/Income__Rewards HTTP/1.1" 200 2690
127.0.0.1 - - [19/Nov/2018 21:46:09] "GET 
/view/year/2017/journal/Expenses__Personal__Books HTTP/1.1" 200 2735
....
127.0.0.1 - - [19/Nov/2018 21:46:36] "GET /view/year/2017/equity/holdings 
HTTP/1.1" 200 2926
127.0.0.1 - - [19/Nov/2018 21:46:37] "GET /view/year/2017/income HTTP/1.1" 
200 7158
INFO    : Operation: 'clamp'                                          Time: 
     0 ms
INFO    : Operation: 'realize_opening'                                Time: 
     0 ms
INFO    : Operation: 'realize'                                        Time: 
    16 ms
INFO    : Operation: 'realize_closing'                                Time: 
     7 ms
127.0.0.1 - - [19/Nov/2018 21:46:38] "GET /view/year/2018/balsheet HTTP/1.1" 
200 5942
127.0.0.1 - - [19/Nov/2018 21:46:39] "GET 
/view/year/2018/journal/Equity__Opening-Balances HTTP/1.1" 200 12922
....
127.0.0.1 - - [19/Nov/2018 21:49:23] "GET /errors HTTP/1.1" 200 1350
127.0.0.1 - - [19/Nov/2018 21:49:24] "GET /resources/web.css HTTP/1.1" 200 
5034
INFO    : Validating HTML output files & links.
INFO    : Validating: 'test\errors.html'
INFO    : Validating: 'test\index.html'
INFO    : Validating: 'test\source.html'
....
INFO    : Validating: 'test\view\year\2018\journal\Liabilities__AMEX.html'
INFO    : Validating: 
'test\view\year\2018\journal\Liabilities__InkBCash.html'
INFO    : Validation: 226 files processed
ERROR   : Validation error: Missing 
'test\view\year\2018\journal\..%5Cbalsheet.html'
ERROR   : Validation error: Missing 
'test\view\year\2018\journal\..%5Cincome.html'
ERROR   : Validation error: Missing 
'test\view\year\2018\journal\..%5Cindex.html'
ERROR   : Validation error: Missing 
'test\view\year\2018\journal\..%5Cequity%5Choldings.html'
ERROR   : Validation error: Missing 
'test\view\year\2018\journal\..%5Ctrial.html'
ERROR   : Validation error: Missing 
'test\view\year\2018\journal\..%5C..%5C..%5C..%5Cindex.html'
ERROR   : Validation error: Missing 
'test\view\year\2018\journal\..%5C..%5C..%5C..%5Cresources%5Cweb.css'
Output in 'test'


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