Re: [Bibdesk-users] BibDesk not opening bib files

[Christiaan Hofman]

> On 8 Dec 2018, at 16:34, Antonio Fortin via Bibdesk-users 
>  wrote:
> 
> Hi,
> 
> Since yesterday, BibDesk has been refusing to open bib files. That is, when I 
> try to open one, nothing happens. I can create new bibliographies in BibDesk, 
> but existing ones don't open (including newly-created ones). I've tried 
> uninstalling and reinstalling BibDesk, and restarting my computer, with no 
> luck.
> 
> I'm running BibDesk 1.6.19 on macOS 10.13.6. I'm attaching relevant Console 
> messages, in case they help.
> 
> Thanks.
> 
> Best,
> Antonio
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Can you open the files with 1.6.18 (you can get it through the web site)?

Do you have any crash report?

Christiaan

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Re: [Bibdesk-users] BibDesk not opening bib files

[Christiaan Hofman]

Could either of you try out tomorrow's nightly build to see if it fixes the
problem?

Christiaan
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Re: [Bibdesk-users] BibDesk not opening bib files

[Edward Summers]

BibDesk-20181207.dmg still seems to have the same problem. Is there another one 
I should try?

> On Dec 8, 2018, at 12:40 PM, Christiaan Hofman  wrote:
> 
> Could either of you try out tomorrow's nightly build to see if it fixes the 
> problem?
> 
> Christiaan
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Re: [Bibdesk-users] BibDesk not opening bib files

[Christiaan Hofman]

Tomorrow (I cannot go back in time to fix it yesterday).

Christiaan

Op za 8 dec. 2018 18:45 schreef Edward Summers  BibDesk-20181207.dmg still seems to have the same problem. Is there
> another one I should try?
>
> > On Dec 8, 2018, at 12:40 PM, Christiaan Hofman 
> wrote:
> >
> > Could either of you try out tomorrow's nightly build to see if it fixes
> the problem?
> >
> > Christiaan
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Re: [Bibdesk-users] BibDesk not opening bib files

[Ed Summers]

I cannot go into the future and test something either :-) But I can wait patiently until tomorrow.On Dec 8, 2018 12:53 PM, Christiaan Hofman  wrote:Tomorrow (I cannot go back in time to fix it yesterday). ChristiaanOp za 8 dec. 2018 18:45 schreef Edward Summers  On Dec 8, 2018, at 12:40 PM, Christiaan Hofman  wrote:
> 
> Could either of you try out tomorrow's nightly build to see if it fixes the problem?
> 
> Christiaan
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Re: [Bibdesk-users] BibDesk not opening bib files

[Christiaan Hofman]

> On 8 Dec 2018, at 19:00, Ed Summers  wrote:
> 
> I cannot go into the future and test something either :-) But I can wait 
> patiently until tomorrow.


Well, that’s how most people go to the future ;-)

Christiaan

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Re: [Bibdesk-users] BibDesk not opening bib files

[Christiaan Hofman]

Anyway, it looks like both of you have some ill formed author names in some 
publication items. I wonder if you have any idea which they are and what they 
look like?

Christiaan

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Re: [Bibdesk-users] BibDesk not opening bib files

[Edward Summers]

https://raw.githubusercontent.com/edsu/inkdroid.org/master/citations.bib

> On Dec 8, 2018, at 1:20 PM, Christiaan Hofman  wrote:
> 
> Anyway, it looks like both of you have some ill formed author names in some 
> publication items. I wonder if you have any idea which they are and what they 
> look like?
> 
> Christiaan


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Re: [Bibdesk-users] BibDesk not opening bib files

[Antonio Fortin via Bibdesk-users]

I'll look into that, but the problem was reproducible when opening empty
bibliographies, which suggests that ill-formed author names is unlikely
to be the cause.

No crash reports for BibDesk.

Best,
Antonio


Christiaan Hofman wrote:
> Anyway, it looks like both of you have some ill formed author names in
> some publication items. I wonder if you have any idea which they are
> and what they look like?
>
> Christiaan
>
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Re: [Bibdesk-users] BibDesk not opening bib files

[Christiaan Hofman]

> On 8 Dec 2018, at 19:27, Edward Summers  wrote:
> 
> https://raw.githubusercontent.com/edsu/inkdroid.org/master/citations.bib
> 
>> On Dec 8, 2018, at 1:20 PM, Christiaan Hofman  wrote:
>> 
>> Anyway, it looks like both of you have some ill formed author names in some 
>> publication items. I wonder if you have any idea which they are and what 
>> they look like?
>> 
>> Christiaan

Thanks. The problem is in the author “boyd, dana”, note the capitalization, 
which the bibtex parser doesn’t interpret as a last name (lower case names are 
interpreted as a “von” part).

I did not realize this error could happen. Tomorrow’s nightly won’t choke on 
this.

Christiaan

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Re: [Bibdesk-users] BibDesk not opening bib files

[Christiaan Hofman]

Really? I get no problem with either old bibliographies and empty ones. Do you 
have a different OS version?

Christiaan

> On 8 Dec 2018, at 19:28, Antonio Fortin via Bibdesk-users 
>  wrote:
> 
> I'll look into that, but the problem was reproducible when opening empty 
> bibliographies, which suggests that ill-formed author names is unlikely to be 
> the cause.
> 
> No crash reports for BibDesk.
> 
> Best,
> Antonio
> 
> 
> Christiaan Hofman wrote:
>> Anyway, it looks like both of you have some ill formed author names in some 
>> publication items. I wonder if you have any idea which they are and what 
>> they look like?
>> 
>> Christiaan

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Re: [Bibdesk-users] BibDesk not opening bib files

[Antonio Fortin via Bibdesk-users]

I'm on macOS 10.13.6. Could it be that although the offending
bibliography wouldn't open, once I attempted to open it, it prevented
any other bibliographies from opening?

Best,
Antonio


Christiaan Hofman wrote:
> Really? I get no problem with either old bibliographies and empty
> ones. Do you have a different OS version?
>
> Christiaan
>
>> On 8 Dec 2018, at 19:28, Antonio Fortin via Bibdesk-users
>> > > wrote:
>>
>> I'll look into that, but the problem was reproducible when opening
>> empty bibliographies, which suggests that ill-formed author names is
>> unlikely to be the cause.
>>
>> No crash reports for BibDesk.
>>
>> Best,
>> Antonio
>>
>>
>> Christiaan Hofman wrote:
>>> Anyway, it looks like both of you have some ill formed author names
>>> in some publication items. I wonder if you have any idea which they
>>> are and what they look like?
>>>
>>> Christiaan
>
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Re: [Bibdesk-users] BibDesk not opening bib files

[Christiaan Hofman]

That could be true. I guess that due to the exception the app can get into an 
invalid zombie state. I thought it would crash, but apparently it doesn't

Christiaan

> On 8 Dec 2018, at 19:39, Antonio Fortin via Bibdesk-users 
>  wrote:
> 
> I'm on macOS 10.13.6. Could it be that although the offending bibliography 
> wouldn't open, once I attempted to open it, it prevented any other 
> bibliographies from opening?
> 
> Best,
> Antonio
> 
> 
> Christiaan Hofman wrote:
>> Really? I get no problem with either old bibliographies and empty ones. Do 
>> you have a different OS version?
>> 
>> Christiaan
>> 
>>> On 8 Dec 2018, at 19:28, Antonio Fortin via Bibdesk-users 
>>> >> > wrote:
>>> 
>>> I'll look into that, but the problem was reproducible when opening empty 
>>> bibliographies, which suggests that ill-formed author names is unlikely to 
>>> be the cause.
>>> 
>>> No crash reports for BibDesk.
>>> 
>>> Best,
>>> Antonio
>>> 
>>> 
>>> Christiaan Hofman wrote:
 Anyway, it looks like both of you have some ill formed author names in 
 some publication items. I wonder if you have any idea which they are and 
 what they look like?
 
 Christiaan

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[Bibdesk-users] BibDesk not opening bib files

[Antonio Fortin via Bibdesk-users]

Hi,

Since yesterday, BibDesk has been refusing to open bib files. That is,
when I try to open one, nothing happens. I can create new bibliographies
in BibDesk, but existing ones don't open (including newly-created ones).
I've tried uninstalling and reinstalling BibDesk, and restarting my
computer, with no luck.

I'm running BibDesk 1.6.19 on macOS 10.13.6. I'm attaching relevant
Console messages, in case they help.

Thanks.

Best,
Antonio
default 15:07:28.991644 +0100   BibDesk LSExceptions shared instance 
invalidated for timeout.
default 15:07:35.183326 +0100   BibDesk [WARNING] could not find container for 
id: 
default 15:08:24.493512 +0100   syspolicyd  temporarySigning type=3 
matchFlags=0x0 path=/Users/antonio/Downloads/BibDesk-1.6.19.dmg
default 15:08:25.716012 +0100   kernel  hfs: mounted BibDesk on device disk2s2
default 15:08:49.602789 +0100   kernel  hfs: unmount initiated on BibDesk on 
device disk2s2
default 15:08:53.008488 +0100   amfid   
/Applications/BibDesk.app/Contents/MacOS/BibDesk signature not valid: -67050
default 15:09:44.652597 +0100   amfid   
/Applications/BibDesk.app/Contents/Frameworks/yaz.framework/Versions/A/yaz 
signature not valid: -67050
default 15:09:44.696992 +0100   amfid   
/Applications/BibDesk.app/Contents/Frameworks/AGRegex.framework/Versions/A/AGRegex
 signature not valid: -67050
default 15:09:44.724644 +0100   amfid   
/Applications/BibDesk.app/Contents/Frameworks/FileView.framework/Versions/A/FileView
 signature not valid: -67050
default 15:09:44.748941 +0100   amfid   
/Applications/BibDesk.app/Contents/Frameworks/BTParse.framework/Versions/A/BTParse
 signature not valid: -67050
default 15:09:44.771396 +0100   amfid   
/Applications/BibDesk.app/Contents/Frameworks/SkimNotesBase.framework/Versions/A/SkimNotesBase
 signature not valid: -67050
default 15:09:44.798075 +0100   amfid   
/Applications/BibDesk.app/Contents/Frameworks/Sparkle.framework/Versions/A/Sparkle
 signature not valid: -67050
default 15:09:44.880009 +0100   launchservicesd CHECKIN:0x0-0x60b60b 3261 
edu.ucsd.cs.mmccrack.bibdesk
default 15:09:45.356348 +0100   BibDesk Read options: 0 -- URL:  -- 
purposeID: 538C8B04-447C-46D1-B7D6-ED7CD77E3B38 -- claimID: 
FFF8368D-4E48-44DF-BD3E-0A2C04D471E9
default 15:09:45.364725 +0100   BibDesk Claim 
FFF8368D-4E48-44DF-BD3E-0A2C04D471E9 granted in client
default 15:09:45.364769 +0100   BibDesk Claim 
FFF8368D-4E48-44DF-BD3E-0A2C04D471E9 invoked in client
error   15:09:45.389909 +0100   BibDesk [ERROR] Failed getting container for 
URL: , error: 
default 15:09:45.390016 +0100   BibDesk [WARNING] could not find container for 
id: 
default 15:09:55.195034 +0100   BibDesk LSExceptions shared instance 
invalidated for timeout.
default 15:09:58.553303 +0100   BibDesk -[NSNull stringByRemovingCurlyBraces]: 
unrecognized selector sent to instance 0x7fff885e1e70
error   15:09:58.553694 +0100   BibDesk 
error   15:09:58.556581 +0100   BibDesk 
default 16:21:13.764992 +0100   BibDesk Adding presenter 
00079335-D777-48D6-BAAF-FC282D9EF5FA for URL: 
default 16:21:13.765381 +0100   BibDesk Adding presenter 
00079335-D777-48D6-BAAF-FC282D9EF5FA for URL: 
default 16:21:16.804285 +0100   BibDesk WiFi Platform capabilities 38000.
default 16:21:16.804763 +0100   BibDesk Device supports Legacy P2P
default 16:21:17.092018 +0100   BibDesk Establishing xpc connection to lsd
error   16:21:17.157203 +0100   tccdUnable to verify code signing identity 
of edu.ucsd.cs.mmccrack.bibdesk:  code failed to satisfy specified code 
requirement(s)
default 16:21:17.610791 +0100   BibDesk SFBrowserCallBack (node = {domain = Network})
default 16:21:19.283058 +0100   BibDesk MacOS error: -67050
default 16:21:19.285900 +0100   BibDesk MacOS error: -67050
default 16:21:19.301025 +0100   BibDesk MacOS error: -67062
default 16:21:19.302949 +0100   BibDesk MacOS error: -67062
default 16:21:19.354966 +0100   BibDesk MacOS error: -67050
default 16:21:19.359464 +0100   BibDesk MacOS error: -67050
default 16:21:19.594808 +0100   BibDesk MacOS error: -67050
default 16:21:19.596715 +0100   BibDesk MacOS error: -67050
default 16:21:19.620531 +0100   BibDesk MacOS error: -67050
default 16:21:19.634175 +0100   BibDesk MacOS error: -67050
default 16:21:19.653582 +0100   BibDesk  marked as needing layout, 
even though it received and enqueued needing layout for the past 3 cycle(s). 
Future marking as needing layout might be ignored. 
default 16:21:19.667565 +0100   BibDesk Trust evaluate failure: [leaf 
TemporalValidity] [ca1 TemporalValidity]
default 16:21:19.680173 +0100   BibDesk MacOS error: -67050
default 16:21:19.681444 +0100   BibDesk MacOS error: -67050
default 16:21:19.686670 +0100   BibDesk MacOS error: -67062
default 16:21:19.688990 +0100   BibDesk MacOS error: -67062
default 16:21:19.716541 +0100   BibDesk MacOS error: -67050
default 16:21:19.719083 +0100   BibDesk MacOS error: -67050
default 16:21:19.747418 +0100   BibDesk MacOS error: -67050
default 16:21:19.753967 +0100   BibDesk MacOS