Re: [Bioc-devel] package citation and version is not updated
This is fixed now. Thanks for the report. Dan - Original Message - > From: "Ludwig Geistlinger" > To: "bioc-devel" > Sent: Friday, January 29, 2016 2:06:37 AM > Subject: [Bioc-devel] package citation and version is not updated > Dear Dan, > > For some reason the citation on my package's landing page > > http://bioconductor.org/packages/EnrichmentBrowser.html > > is not displayed in agreement with my inst/CITATION file. > > Furthermore, the version number is also not up to date here, although > displayed correctly at the bottom of the page (--> Package Archives). > > How to resolve this? > > Thx, > Ludwig > > -- > Dipl.-Bioinf. Ludwig Geistlinger > > Lehr- und Forschungseinheit für Bioinformatik > Institut für Informatik > Ludwig-Maximilians-Universität München > Amalienstrasse 17, 2. Stock, Büro A201 > 80333 München > > Tel.: 089-2180-4067 > eMail: ludwig.geistlin...@bio.ifi.lmu.de > > ___ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
Re: [Bioc-devel] question about citation file
I think you forgot to 'svn add' the CITATION file. Dan - Original Message - > From: "Samuel E Zimmerman" > To: "bioc-devel" > Sent: Friday, January 29, 2016 6:34:49 AM > Subject: [Bioc-devel] question about citation file > Hi Everyone, > > I just uploaded a new version of my package "pathVar" to the development > branch > of bioconductor. The goal was to change the citation on the landing page of > the > package. Currently the citation looks like this: > > > Mar J, torrente Ld and Zimmerman S (2015). pathVar: Methods to Find Pathways > with Significantly Different Variability. R package version 1.1.0. > > > However, I created a new CITATION file in the inst directory of my package. > Below is the contents of the CITATION file > > > year <- sub("-.*", "", meta$Date) > note <- sprintf("R package version %s", meta$Version) > > bibentry(bibtype = "Manual",title="pathVar: Methods to Find Pathways with > Significantly Different Variability", author = c(person("Laurence","de > Torrente"),person("Samuel","Zimmerman"),person("Jessica","Mar")),year = year, > note = note, > textVersion = paste("de Torrente L, Zimmerman S, and Mar J (2015). pathVar: > Methods to Find Pathways with Significantly Different Variability. R package > version 1.1.2")) > > Does anyone know why this is being ignored? > > Also here is a link to the landing page of the devel version of the package: > https://www.bioconductor.org/packages/3.3/bioc/html/pathVar.html > > Thank you all very much for your help on this mailing list. > > Best, > Sam > > > [[alternative HTML version deleted]] > > ___ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
Re: [Bioc-devel] question about citation file
I'll take a look. Dan - Original Message - > From: "Samuel E Zimmerman" > To: "bioc-devel" > Sent: Friday, January 29, 2016 6:34:49 AM > Subject: [Bioc-devel] question about citation file > Hi Everyone, > > I just uploaded a new version of my package "pathVar" to the development > branch > of bioconductor. The goal was to change the citation on the landing page of > the > package. Currently the citation looks like this: > > > Mar J, torrente Ld and Zimmerman S (2015). pathVar: Methods to Find Pathways > with Significantly Different Variability. R package version 1.1.0. > > > However, I created a new CITATION file in the inst directory of my package. > Below is the contents of the CITATION file > > > year <- sub("-.*", "", meta$Date) > note <- sprintf("R package version %s", meta$Version) > > bibentry(bibtype = "Manual",title="pathVar: Methods to Find Pathways with > Significantly Different Variability", author = c(person("Laurence","de > Torrente"),person("Samuel","Zimmerman"),person("Jessica","Mar")),year = year, > note = note, > textVersion = paste("de Torrente L, Zimmerman S, and Mar J (2015). pathVar: > Methods to Find Pathways with Significantly Different Variability. R package > version 1.1.2")) > > Does anyone know why this is being ignored? > > Also here is a link to the landing page of the devel version of the package: > https://www.bioconductor.org/packages/3.3/bioc/html/pathVar.html > > Thank you all very much for your help on this mailing list. > > Best, > Sam > > > [[alternative HTML version deleted]] > > ___ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
Re: [Bioc-devel] package citation and version is not updated
I will look into this, thanks for the report. Dan - Original Message - > From: "Ludwig Geistlinger" > To: "bioc-devel" > Sent: Friday, January 29, 2016 2:06:37 AM > Subject: [Bioc-devel] package citation and version is not updated > Dear Dan, > > For some reason the citation on my package's landing page > > http://bioconductor.org/packages/EnrichmentBrowser.html > > is not displayed in agreement with my inst/CITATION file. > > Furthermore, the version number is also not up to date here, although > displayed correctly at the bottom of the page (--> Package Archives). > > How to resolve this? > > Thx, > Ludwig > > -- > Dipl.-Bioinf. Ludwig Geistlinger > > Lehr- und Forschungseinheit für Bioinformatik > Institut für Informatik > Ludwig-Maximilians-Universität München > Amalienstrasse 17, 2. Stock, Büro A201 > 80333 München > > Tel.: 089-2180-4067 > eMail: ludwig.geistlin...@bio.ifi.lmu.de > > ___ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
[Bioc-devel] question about citation file
Hi Everyone, I just uploaded a new version of my package "pathVar" to the development branch of bioconductor. The goal was to change the citation on the landing page of the package. Currently the citation looks like this: Mar J, torrente Ld and Zimmerman S (2015). pathVar: Methods to Find Pathways with Significantly Different Variability. R package version 1.1.0. However, I created a new CITATION file in the inst directory of my package. Below is the contents of the CITATION file year <- sub("-.*", "", meta$Date) note <- sprintf("R package version %s", meta$Version) bibentry(bibtype = "Manual",title="pathVar: Methods to Find Pathways with Significantly Different Variability", author = c(person("Laurence","de Torrente"),person("Samuel","Zimmerman"),person("Jessica","Mar")),year = year, note = note, textVersion = paste("de Torrente L, Zimmerman S, and Mar J (2015). pathVar: Methods to Find Pathways with Significantly Different Variability. R package version 1.1.2")) Does anyone know why this is being ignored? Also here is a link to the landing page of the devel version of the package: https://www.bioconductor.org/packages/3.3/bioc/html/pathVar.html Thank you all very much for your help on this mailing list. Best, Sam [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
[Bioc-devel] package citation and version is not updated
Dear Dan, For some reason the citation on my package's landing page http://bioconductor.org/packages/EnrichmentBrowser.html is not displayed in agreement with my inst/CITATION file. Furthermore, the version number is also not up to date here, although displayed correctly at the bottom of the page (--> Package Archives). How to resolve this? Thx, Ludwig -- Dipl.-Bioinf. Ludwig Geistlinger Lehr- und Forschungseinheit für Bioinformatik Institut für Informatik Ludwig-Maximilians-Universität München Amalienstrasse 17, 2. Stock, Büro A201 80333 München Tel.: 089-2180-4067 eMail: ludwig.geistlin...@bio.ifi.lmu.de ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel